CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LotgiG69875
(
Lottia gigantea
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
LotgiG69875
T121817_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
mnm-2
M00616_2.00
Caenorhabditis elegans
RCNBWTCNNN
NNNGAWVNGY
PBM
Narasimhan et al.(2015)
pTH9080
0.760
0.826
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
LotgiP69875
C2H2 ZF
3
25
YQCDVCYKRFSRSNTLVTHKRIH
LotgiP69875
C2H2 ZF
31
53
FKCEVCDRAFRQPGNLTRHRLTH
LotgiP69875
C2H2 ZF
59
81
YVCTVCNKAFNRASNLQTHMKIH
Links
Other
C2H2 ZF
family TFs
Other
Lottia gigantea
TFs
11 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
LotgiG58234
Lottia gigantea
LotgiG58234
I
0.801
CBG16689
Caenorhabditis briggsae
CBG16689
I
0.760
CBN21670
Caenorhabditis brenneri
CBN21670
I
0.760
CJA18173
Caenorhabditis japonica
CJA18173
I
0.760
CRE00068
Caenorhabditis remanei
CRE00068
I
0.760
mnm-2
Caenorhabditis elegans
WBGene00003380
D
0.760
ACAC_0001268601
Angiostrongylus cantonensis
ACAC_0001268601
I
0.757
ACOC_0000685901
Angiostrongylus costaricensis
ACOC_0000685901
I
0.757
ANCCEY_06081
Ancylostoma ceylanicum
ANCCEY_06081
I
0.757
DICVIV_12463
Dictyocaulus viviparus
DICVIV_12463
I
0.757
HPBE_0001596301
Heligmosomoides bakeri
HPBE_0001596301
I
0.757