CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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maker-pag1_scaffold_440-fgenesh-gene-0.3
(
Pythium aphanidermatum
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
maker-pag1_scaffold_440-fgenesh-gene-0.3
T122529_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Phyra42912
M01181_2.00
Phytophthora ramorum
RCSCATCHYN
NRDGATGSGY
PBM
Lambert et al.(2019)
pTH11167
0.816
0.928
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EPrPA00000021265
C2H2 ZF
167
191
FICPEVHCGKTFPRSFALRRHMRIH
EPrPA00000021265
C2H2 ZF
197
221
YACDFAGCTQRFNTSGNLSRHKRIH
EPrPA00000021265
C2H2 ZF
227
251
YPCVFSSCGKRFNTSTKLKRHMRIH
Links
Other
C2H2 ZF
family TFs
Other
Pythium aphanidermatum
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Phyra42912
Phytophthora ramorum
Phyra42912
D
0.816
maker-pir_contig_54-snap-gene-0.26
Pythium irregulare
maker-pir_contig_54-snap-gene-0.26
I
0.816
maker-pve_contig_642-snap-gene-0.15
Pythium vexans
maker-pve_contig_642-snap-gene-0.15
I
0.807
fgenesh1_pg.C_scaffold_2000429
Phytophthora capsici
fgenesh1_pg.C_scaffold_2000429
I
0.804
gw1.8.393.1
Phytophthora capsici
gw1.8.393.1
I
0.804
PITG_10815
Phytophthora infestans
PITG_10815
I
0.804
F443_10717
Phytophthora parasitica
F443_10717
I
0.804
HpaG802957
Hyaloperonospora arabidopsidis
HpaG802957
I
0.804
fgenesh_scip_prom.46568.8091
Phytophthora kernoviae
fgenesh_scip_prom.46568.8091
I
0.791
ALNC14_012910
Albugo laibachii
ALNC14_012910
I
0.785