CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Phyra42912
(
Phytophthora ramorum
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
Phyra42912
T126264_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Phyra42912
M01181_2.00
Phytophthora ramorum
RCSCATCHYN
NRDGATGSGY
PBM
Lambert et al.(2019)
pTH11167
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.755
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01181_2.00
C2H2 ZF
7
31
FICTEVHCGKQFPRSFALRRHMRIH
M01181_2.00
C2H2 ZF
37
61
YACDYEGCAQRFNTSGNLSRHKRIH
M01181_2.00
C2H2 ZF
67
91
YPCIFATCGKRFNTSTKLKRHMRIH
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Phyra42912
C2H2 ZF
7
31
FICTEVHCGKQFPRSFALRRHMRIH
Phyra42912
C2H2 ZF
37
61
YACDYEGCAQRFNTSGNLSRHKRIH
Phyra42912
C2H2 ZF
67
91
YPCIFATCGKRFNTSTKLKRHMRIH
Links
Other
C2H2 ZF
family TFs
Other
Phytophthora ramorum
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
maker-pir_contig_54-snap-gene-0.26
Pythium irregulare
maker-pir_contig_54-snap-gene-0.26
I
0.824
maker-pag1_scaffold_440-fgenesh-gene-0.3
Pythium aphanidermatum
maker-pag1_scaffold_440-fgenesh-gene-0.3
I
0.816
gw1.8.393.1
Phytophthora capsici
gw1.8.393.1
I
0.807
F443_10717
Phytophthora parasitica
F443_10717
I
0.807
fgenesh1_pg.C_scaffold_2000429
Phytophthora capsici
fgenesh1_pg.C_scaffold_2000429
I
0.804
HpaG802957
Hyaloperonospora arabidopsidis
HpaG802957
I
0.804
PITG_10815
Phytophthora infestans
PITG_10815
I
0.804
maker-pve_contig_642-snap-gene-0.15
Pythium vexans
maker-pve_contig_642-snap-gene-0.15
I
0.804
fgenesh_scip_prom.46568.8091
Phytophthora kernoviae
fgenesh_scip_prom.46568.8091
I
0.788
ALNC14_012910
Albugo laibachii
ALNC14_012910
I
0.781