CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
maker-piw_contig_2368-snap-gene-0.2
(
Pythium iwayamai
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
maker-piw_contig_2368-snap-gene-0.2
T122597_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Phyra84400
M01183_2.00
Phytophthora ramorum
HRHCKYCGGM
KCCGRMGDYD
PBM
Lambert et al.(2019)
pTH11169
0.768
0.826
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EPrPW00000023873
C2H2 ZF
159
183
FKCPFPGCGKEFQLKGNLKRHENIH
EPrPW00000023873
C2H2 ZF
189
211
FRCKFCGKDFLRKADMEVHHRVH
EPrPW00000023873
C2H2 ZF
217
241
YQCKFDDCDKSFARRSDLLSHERTH
EPrPW00000023873
C2H2 ZF
247
271
FACLYPGCERHFARKFDLQKHQRMH
Links
Other
C2H2 ZF
family TFs
Other
Pythium iwayamai
TFs
8 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
maker-pir_contig_583-fgenesh-gene-0.5
Pythium irregulare
maker-pir_contig_583-fgenesh-gene-0.5
I
0.813
F443_04535
Phytophthora parasitica
F443_04535
I
0.768
fgenesh_scip_prom.28083.941
Phytophthora lateralis
fgenesh_scip_prom.28083.941
I
0.768
HpaG807312
Hyaloperonospora arabidopsidis
HpaG807312
I
0.768
Phyra84400
Phytophthora ramorum
Phyra84400
D
0.768
Physo138577
Phytophthora sojae
Physo138577
I
0.759
PITG_10525
Phytophthora infestans
PITG_10525
I
0.756
estExt_Genewise1Plus.C_130008
Phytophthora capsici
estExt_Genewise1Plus.C_130008
I
0.756