CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Phyra84400
(
Phytophthora ramorum
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
Phyra84400
T126290_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Phyra84400
M01183_2.00
Phytophthora ramorum
HRHCKYCGGM
KCCGRMGDYD
PBM
Lambert et al.(2019)
pTH11169
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.755
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01183_2.00
C2H2 ZF
51
75
FRCTFPGCGREFQLKGNLKRHANIH
M01183_2.00
C2H2 ZF
81
103
FACKFCGKRFLRKADMEVHYRVH
M01183_2.00
C2H2 ZF
109
133
YRCKYEDCGKCFARRSDLLSHERTH
M01183_2.00
C2H2 ZF
139
163
FACAFPNCDRSFARKFDLHKHQRLH
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Phyra84400
C2H2 ZF
59
83
FRCTFPGCGREFQLKGNLKRHANIH
Phyra84400
C2H2 ZF
89
111
FACKFCGKRFLRKADMEVHYRVH
Phyra84400
C2H2 ZF
117
141
YRCKYEDCGKCFARRSDLLSHERTH
Phyra84400
C2H2 ZF
147
171
FACAFPNCDRSFARKFDLHKHQRLH
Links
Other
C2H2 ZF
family TFs
Other
Phytophthora ramorum
TFs
9 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
fgenesh_scip_prom.28083.941
Phytophthora lateralis
fgenesh_scip_prom.28083.941
I
0.824
F443_04535
Phytophthora parasitica
F443_04535
I
0.821
HpaG807312
Hyaloperonospora arabidopsidis
HpaG807312
I
0.821
Physo138577
Phytophthora sojae
Physo138577
I
0.812
PITG_10525
Phytophthora infestans
PITG_10525
I
0.809
estExt_Genewise1Plus.C_130008
Phytophthora capsici
estExt_Genewise1Plus.C_130008
I
0.797
maker-pir_contig_583-fgenesh-gene-0.5
Pythium irregulare
maker-pir_contig_583-fgenesh-gene-0.5
I
0.771
maker-piw_contig_2368-snap-gene-0.2
Pythium iwayamai
maker-piw_contig_2368-snap-gene-0.2
I
0.768
maker-pve_contig_99-fgenesh-gene-0.14
Pythium vexans
maker-pve_contig_99-fgenesh-gene-0.14
I
0.767