CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PGSC0003DMG400009082
(
Solanum tuberosum
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
PGSC0003DMG400009082
T125808_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400023459
C2H2 ZF
77
101
FLCSYEGCGKTFIDAGALRKHSHIH
PGSC0003DMT400023459
C2H2 ZF
106
130
YVCHYEGCGKKFLDSSKLKRHFLIH
PGSC0003DMT400023459
C2H2 ZF
136
160
YVCPHEGCGKAFSLDFNLRSHMKTH
PGSC0003DMT400023459
C2H2 ZF
166
191
HICPYPECGKRYAHEYKLKNHISSTH
Links
Other
C2H2 ZF
family TFs
Other
Solanum tuberosum
TFs
3 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Solyc03g083310.2
Solanum lycopersicum
Solyc03g083310.2
N
0.827
gene11016-v1.0-hybrid
Fragaria vesca
gene11016-v1.0-hybrid
N
0.824
Lus10011009.g
Linum usitatissimum
Lus10011009.g
N
0.791