CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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bnc-1
(
Caenorhabditis elegans
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
WBGene00044791
T131651_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Is expressed in cholinergic neurons and in male. Human ortholog(s) of this gene implicated in primary ovarian insufficiency 16. Orthologous to human BNC1 (basonuclin 1) and BNC2 (basonuclin 2). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
bnc-1
M00648_2.00
Caenorhabditis elegans
YGTCVHNNN
NNNDBGACR
PBM
Narasimhan et al.(2015)
pTH10026
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.755
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00648_2.00
C2H2 ZF
51
73
ACDICSKSFCDKGALKIHTSAVH
M00648_2.00
C2H2 ZF
78
101
HTCTVTGCGKQFSSRRSRNRHSSN
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
F55C5.11
C2H2 ZF
108
130
ACDICSKSFCDKGALKIHTSAVH
F55C5.11
C2H2 ZF
135
158
HTCTVTGCGKQFSSRRSRNRHSSN
Links
Other
C2H2 ZF
family TFs
Other
Caenorhabditis elegans
TFs
5 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CRE27386
Caenorhabditis remanei
CRE27386
I
0.827
CJA14382
Caenorhabditis japonica
CJA14382
I
0.827
CBN18182
Caenorhabditis brenneri
CBN18182
I
0.817
CBN30821
Caenorhabditis brenneri
CBN30821
I
0.817
BXY_1034900
Bursaphelenchus xylophilus
BXY_1034900
I
0.771