RPH1 (Saccharomyces cerevisiae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 YER169W T131835_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RPH1
M00025_2.00		 Saccharomyces cerevisiae
NNHCCCCTAAN
NTTAGGGGDNN		 PBM
Badis et al.(2008)
RPH1_4571		 (Direct) (Direct)
RPH1
M01531_2.00		 Saccharomyces cerevisiae
YNMCCCCTWWWW
WWWWAGGGGKNR		 PBM
Zhu et al.(2009)
Rph1		 (Direct) (Direct)
RPH1
M07455_2.00		 Saccharomyces cerevisiae
NCCCCTWA
TWAGGGGN		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0372.1		 (Direct) (Direct)
RPH1
M08522_2.00		 Saccharomyces cerevisiae
NCCCCTWA
TWAGGGGN		 Misc
DeBoer et al.(2011)
YER169W_547		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GIS1
M00019_2.00 		Saccharomyces cerevisiae
NCCCCTWDNN
NNHWAGGGGN		 PBM
Badis et al.(2008)
GIS1_4481 		0.816 0.911
GIS1
M07449_2.00 		Saccharomyces cerevisiae
HCCCCTWDN
NHWAGGGGD		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0306.1 		0.816 0.911
GIS1
M08515_2.00 		Saccharomyces cerevisiae
HCCCCTWDN
NHWAGGGGD		 Misc
DeBoer et al.(2011)
YDR096W_562 		0.816 0.911
For this family, TFs with SR scores > 0.755 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00025_2.00 C2H2 ZF 50 73
M00025_2.00 C2H2 ZF 79 100
M01531_2.00 C2H2 ZF 709 732
M01531_2.00 C2H2 ZF 738 759

DNA Binding Domains

Protein ID Domain From To Sequence
YER169W C2H2 ZF 709 732
YER169W C2H2 ZF 738 759

Links

Other C2H2 ZF family TFs
Other Saccharomyces cerevisiae TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
6757_YER169W Saccharomyces paradoxus 6757_YER169W I 0.827
Ecym_3520 Eremothecium cymbalariae Ecym_3520 I 0.822
Kpol_1032p52 Vanderwaltozyma polyspora Kpol_1032p52 I 0.822
TDEL_0A01300 Torulaspora delbrueckii TDEL_0A01300 I 0.822
KAFR_0B02550 Kazachstania africana KAFR_0B02550 I 0.816
KNAG_0H03010 Kazachstania naganishii KNAG_0H03010 I 0.816
SKUD_141701 Saccharomyces kudriavzevii SKUD_141701 I 0.816
SU7_0636 Saccharomyces arboricola SU7_0636 I 0.816
TPHA_0A01940 Tetrapisispora phaffii TPHA_0A01940 I 0.816
GIS1 Saccharomyces cerevisiae YDR096W D 0.816
3770_YDR096W Saccharomyces mikatae 3770_YDR096W I 0.816
4088_Multiple Saccharomyces paradoxus 4088_Multiple I 0.816
4347_Multiple Saccharomyces bayanus 4347_Multiple I 0.816
SU7_0955 Saccharomyces arboricola SU7_0955 I 0.803
6173_YER169W Saccharomyces mikatae 6173_YER169W I 0.803
7085_YER169W Saccharomyces bayanus 7085_YER169W I 0.803
AACERI_AaceriAGR117C Saccharomycetaceae sp ashbya aceri AACERI_AaceriAGR117C I 0.798
AGOS_AGR117C Ashbya gossypii AGOS_AGR117C I 0.798
CAGL0L11880g Candida glabrata CAGL0L11880g I 0.798
KLLA0_C17710g Kluyveromyces lactis KLLA0_C17710g I 0.798
KLTH0G14454g Lachancea thermotolerans KLTH0G14454g I 0.798
KNAG_0G01870 Kazachstania naganishii KNAG_0G01870 I 0.798
LALA0_S07e07030g Lachancea lanzarotensis LALA0_S07e07030g I 0.798
NCAS_0B04840 Naumovozyma castellii NCAS_0B04840 I 0.798
NDAI_0B02250 Naumovozyma dairenensis NDAI_0B02250 I 0.798
TBLA_0F03830 Tetrapisispora blattae TBLA_0F03830 I 0.798
ZBAI_04846 Zygosaccharomyces bailii ZBAI_04846 I 0.798
ZBAI_06407 Zygosaccharomyces bailii ZBAI_06407 I 0.798
ZYRO0B11770g Zygosaccharomyces rouxii ZYRO0B11770g I 0.798
Scas_Contig681.19 Saccharomyces castellii Scas_Contig681.19 I 0.798
KLTH0G14454g Kluyveromyces thermotolerans KLTH0G14454g I 0.798
Kwal_23453 Kluyveromyces waltii Kwal_23453 I 0.798
SAKL0H17842g Lachancea kluyveri SAKL0H17842g I 0.798
KAFR_0A02380 Kazachstania africana KAFR_0A02380 I 0.774
TBLA_0E04220 Tetrapisispora blattae TBLA_0E04220 I 0.759