Cmyd_10012120 (Chelonia mydas)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cmyd_10012120 T134368_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YY1
M02877_2.00 		Homo sapiens
NVSRCCATNDH
DHNATGGYSBN		 SELEX
Jolma et al.(2013)
YY1_1 		0.813 1.000
YY1
M04406_2.00 		Homo sapiens
NDCCATYTTKRRBNDWNHGTGCK
MGCACDNWHNVYYMAARATGGHN		 SELEX
Yin et al.(2017)
YY1_FL_HT-SELEX_1 		0.813 1.000
YY1
M04407_2.00 		Homo sapiens
NKMCGCCATYTTGN
NCAARATGGCGKMN		 SELEX
Yin et al.(2017)
YY1_FL_HT-SELEX_2 		0.813 1.000
YY1
M05845_2.00 		Homo sapiens
NNNVGCCATNWYD
HRWNATGGCBNNN		 SMiLE-seq
Isakova et al.(2017)
YY1 		0.813 1.000
YY1
M08288_2.00 		Homo sapiens
GCCGCCATBKYB
VRMVATGGCGGC		 ChIP-seq
Schmitges et al.(2016)
P25490_1-4.RCADE 		0.813 1.000
YY1
M08085_2.00 		Homo sapiens
KCVGCCATBTTK
MAAVATGGCBGM		 ChIP-seq
Mathelier et al.(2014)
MA0095.2 		0.813 1.000
YY1
M07855_2.00 		Homo sapiens
VNVGCCGCCATBTTK
MAAVATGGCGGCBNB		 ChIP-seq
Gerstein et al.(2012)
GM12878_YY1_HudsonAlpha 		0.813 1.000
YY1
M07856_2.00 		Homo sapiens
GCSGCCATBTT
AAVATGGCSGC		 ChIP-seq
Gerstein et al.(2012)
GM12891_YY1_HudsonAlpha 		0.813 1.000
YY1
M07857_2.00 		Homo sapiens
BSNVGCSGCCATBTT
AAVATGGCSGCBNSV		 ChIP-seq
Gerstein et al.(2012)
GM12892_YY1_HudsonAlpha 		0.813 1.000
YY1
M07858_2.00 		Homo sapiens
NNVGCSGCCATBTTK
MAAVATGGCSGCBNN		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_YY1_HudsonAlpha 		0.813 1.000
YY1
M07859_2.00 		Homo sapiens
SBSGCSGCCATBTTK
MAAVATGGCSGCSVS		 ChIP-seq
Gerstein et al.(2012)
K562b_YY1_UCD 		0.813 1.000
YY1
M07860_2.00 		Homo sapiens
GCCGCCATBTTKNNN
NNNMAAVATGGCGGC		 ChIP-seq
Gerstein et al.(2012)
K562_YY1_HudsonAlpha 		0.813 1.000
YY1
M07861_2.00 		Homo sapiens
VGCSGCCATBTTK
MAAVATGGCSGCB		 ChIP-seq
Gerstein et al.(2012)
NT2-D1_YY1_UCD 		0.813 1.000
YY1
M08865_2.00 		Homo sapiens
GCCGCCATYTTK
MAARATGGCGGC		 Misc
Kulakovskiy et al.(2013)
TYY1_HUMAN.H11MO.0.A 		0.813 1.000
Yy1
M08971_2.00 		Mus musculus
GCCGCCATBTTB
VAAVATGGCGGC		 Misc
Kulakovskiy et al.(2013)
TYY1_MOUSE.H11MO.0.A 		0.813 1.000
YY1
M10138_2.00 		Homo sapiens
NVNNDCCATNTWNNVWN
NWBNNWANATGGHNNBN		 Transfac
Matys et al.(2006)
V$YY1_01 		0.813 1.000
YY1
M10139_2.00 		Homo sapiens
NNNSBGCCATCTDSNHTSND
HNSADNSHAGATGGCVSNNN		 Transfac
Matys et al.(2006)
V$YY1_02 		0.813 1.000
YY1
M10140_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YY1_03 		0.813 1.000
YY1
M10141_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YY1_07 		0.813 1.000
YY1
M10142_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YY1_08 		0.813 1.000
YY1
M10143_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YY1_Q4_01 		0.813 1.000
YY1
M10144_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YY1_Q6_02 		0.813 1.000
YY1
M10145_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YY1_Q6_03 		0.813 1.000
YY1
M10146_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YY1_Q6 		0.813 1.000
YY1
M04408_2.00 		Homo sapiens
NDCCATYTTKRRCDDWWHGTGCY
RGCACDWWHHGYYMAARATGGHN		 SELEX
Yin et al.(2017)
YY1_FL_Methyl-HT-SELEX_1 		0.813 1.000
YY1
M04409_2.00 		Homo sapiens
RKCSGCCATYTTGD
HCAARATGGCSGMY		 SELEX
Yin et al.(2017)
YY1_FL_Methyl-HT-SELEX_2 		0.813 1.000
YY1
M08237_2.00 		Homo sapiens
VNVGCVGCCATBTTD
HAAVATGGCBGCBNB		 ChIP-seq
Najafabadi et al.(2015b)
YY1 		0.813 0.978
TYY2_RAT
M10385_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YY2 		0.802 0.910
pho
M06053_2.00 		Drosophila melanogaster
KNVGCCATDAHNSY
RSNDTHATGGCBNM		 B1H
Zhu et al.(2011)
pho_FlyReg_FBgn0002521 		0.795 0.944
pho
M06054_2.00 		Drosophila melanogaster
KCCGCCATHWTK
MAWDATGGCGGM		 B1H
Zhu et al.(2011)
pho_SANGER_10_FBgn0002521 		0.795 0.944
pho
M06055_2.00 		Drosophila melanogaster
NKBCGCCATHWTKNN
NNMAWDATGGCGVMN		 B1H
Zhu et al.(2011)
pho_SOLEXA_5_FBgn0002521 		0.795 0.944
phol
M06144_2.00 		Drosophila melanogaster
CGCCATHTTK
MAADATGGCG		 B1H
Zhu et al.(2011)
phol_SANGER_5_FBgn0035997 		0.765 0.843
phol
M06145_2.00 		Drosophila melanogaster
NKNCGCCATNTTKNN
NNMAANATGGCGNMN		 B1H
Zhu et al.(2011)
phol_SOLEXA_5_FBgn0035997 		0.765 0.843
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10012120 C2H2 ZF 276 295
Cmyd_10012120 C2H2 ZF 300 322
Cmyd_10012120 C2H2 ZF 328 352
Cmyd_10012120 C2H2 ZF 358 382

Links

Other C2H2 ZF family TFs
Other Chelonia mydas TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ogr05382 Ophisaurus gracilis Ogr05382 I 0.825
tetur09g00290 Tetranychus urticae tetur09g00290 I 0.822
tetur09g00130 Tetranychus urticae tetur09g00130 I 0.822
L798_03352 Zootermopsis nevadensis L798_03352 I 0.813
HMEL010415 Heliconius melpomene HMEL010415 I 0.813
LotgiG64240 Lottia gigantea LotgiG64240 I 0.813
KGM_02499 Danaus plexippus KGM_02499 I 0.813
RPRC009167 Rhodnius prolixus RPRC009167 I 0.813
SPU_010295 Strongylocentrotus purpuratus SPU_010295 I 0.813
TC015577 Tribolium castaneum TC015577 I 0.813
SMAR005684 Strigamia maritima SMAR005684 I 0.813
SINV16765 Solenopsis invicta SINV16765 I 0.813
GB49343 Apis mellifera GB49343 I 0.813
NV10061 Nasonia vitripennis NV10061 I 0.813
ENSXMAG00000013413 Xiphophorus maculatus ENSXMAG00000013413 I 0.813
ENSPSIG00000016003 Pelodiscus sinensis ENSPSIG00000016003 I 0.813
YY1 Pan troglodytes ENSPTRG00000006717 I 0.813
ENSPPYG00000025949 Pongo abelii ENSPPYG00000025949 I 0.813
ENSPMAG00000006025 Petromyzon marinus ENSPMAG00000006025 I 0.813
ENSPFOG00000007704 Poecilia formosa ENSPFOG00000007704 I 0.813
Yy1 Rattus norvegicus ENSRNOG00000004339 I 0.813
ENSSHAG00000014750 Sarcophilus harrisii ENSSHAG00000014750 I 0.813
YY2 Takifugu rubripes ENSTRUG00000010532 I 0.813
ENSXMAG00000008440 Xiphophorus maculatus ENSXMAG00000008440 I 0.813
yy1a Tetraodon nigroviridis ENSTNIG00000017334 I 0.813
YY2 Tetraodon nigroviridis ENSTNIG00000010738 I 0.813
ENSTGUG00000012753 Taeniopygia guttata ENSTGUG00000012753 I 0.813
CpipJ_CPIJ014689 Culex pipiens CpipJ_CPIJ014689 I 0.813
Aan_R011513 Calypte anna Aan_R011513 I 0.813
yy1.L Xenopus laevis XB-GENE-6254435 I 0.813
yy1 Xenopus tropicalis XB-GENE-961263 I 0.813
HHAL002529-PA Halyomorpha halys HHAL002529-PA I 0.813
CLEC004566 Cimex lectularius CLEC004566 I 0.813
Sakowv30026333m.g Saccoglossus kowalevskii Sakowv30026333m.g I 0.813
yy1.S Xenopus laevis XB-GENE-961267 I 0.813
AALB001578 Anopheles albimanus AALB001578 I 0.813
LLOJ009958 Lutzomyia longipalpis LLOJ009958 I 0.813
PPAI004379 Phlebotomus papatasi PPAI004379 I 0.813
ASIS015128 Anopheles sinensis ASIS015128 I 0.813
AMEC007067 Anopheles melas AMEC007067 I 0.813
AFUN003297 Anopheles funestus AFUN003297 I 0.813
Ocbimv22034269m.g Octopus bimaculoides Ocbimv22034269m.g I 0.813
gw.8.511.1 Branchiostoma floridae gw.8.511.1 I 0.813
Brh_R004031 Buceros rhinoceros Brh_R004031 I 0.813
Cflo_10375--XP_392196.2_APIME Camponotus floridanus Cflo_10375--XP_392196.2_APIME I 0.813
Alligator_sinensis_CCG004251.1 Alligator sinensis Alligator_sinensis_CCG004251.1 I 0.813
Afo_R004638 Aptenodytes forsteri Afo_R004638 I 0.813
ENSPFOG00000002300 Poecilia formosa ENSPFOG00000002300 I 0.813
Cflo_15890--XP_392196.2_APIME Camponotus floridanus Cflo_15890--XP_392196.2_APIME I 0.813
Gfo_R006742 Geospiza fortis Gfo_R006742 I 0.813
yakG036002 Bos grunniens yakG036002 I 0.813
e_gw.8.110.1 Branchiostoma floridae e_gw.8.110.1 I 0.813
Tal_R000269 Tyto alba Tal_R000269 I 0.813
Pvit_14266 Pogona vitticeps Pvit_14266 I 0.813
Myotis_brandtii_YY1_10025332 Myotis brandtii Myotis_brandtii_YY1_10025332 I 0.813
YQE_09404 Dendroctonus ponderosae YQE_09404 I 0.813
yy1a Takifugu rubripes ENSTRUG00000012579 I 0.813
YY1 Homo sapiens ENSG00000100811 D 0.813
yy1a Gasterosteus aculeatus ENSGACG00000008573 I 0.813
ENSGACG00000012595 Gasterosteus aculeatus ENSGACG00000012595 I 0.813
YY1 Felis catus ENSFCAG00000024327 I 0.813
ENSFALG00000002683 Ficedula albicollis ENSFALG00000002683 I 0.813
ENSDNOG00000023949 Dasypus novemcinctus ENSDNOG00000023949 I 0.813
ENSECAG00000005805 Equus caballus ENSECAG00000005805 I 0.813
YY2 Echinops telfairi ENSETEG00000010999 I 0.813
YY1 Gallus gallus ENSGALG00000017388 I 0.813
YY1 Gorilla gorilla ENSGGOG00000026332 I 0.813
ENSMGAG00000013304 Meleagris gallopavo ENSMGAG00000013304 I 0.813
YY1 Microcebus murinus ENSMICG00000006698 I 0.813
ENSMLUG00000024984 Myotis lucifugus ENSMLUG00000024984 I 0.813
ENSLOCG00000011626 Lepisosteus oculatus ENSLOCG00000011626 I 0.813
ENSPANG00000009274 Papio anubis ENSPANG00000009274 I 0.813
ENSGMOG00000010949 Gadus morhua ENSGMOG00000010949 I 0.813
ENSGMOG00000011803 Gadus morhua ENSGMOG00000011803 I 0.813
yy1a Danio rerio ENSDARG00000042796 I 0.813
yy1b Danio rerio ENSDARG00000027978 I 0.813
CGI_10027862 Crassostrea gigas CGI_10027862 I 0.813
CPIJ014689 Culex quinquefasciatus CPIJ014689 I 0.813
DAPPUDRAFT_59123 Daphnia pulex DAPPUDRAFT_59123 I 0.813
CapteG223122 Capitella teleta CapteG223122 I 0.813
BGIBMGA011179 Bombyx mori BGIBMGA011179 I 0.813
ACEP14480 Atta cephalotes ACEP14480 I 0.813
ADAC004141 Anopheles darlingi ADAC004141 I 0.813
ENSACAG00000013402 Anolis carolinensis ENSACAG00000013402 I 0.813
ENSAMEG00000011146 Ailuropoda melanoleuca ENSAMEG00000011146 I 0.813
YY1 Canis familiaris ENSCAFG00000017894 I 0.813
ENSCJAG00000016853 Callithrix jacchus ENSCJAG00000016853 I 0.813
ENSCPOG00000020809 Cavia porcellus ENSCPOG00000020809 I 0.813
YY1 Bos taurus ENSBTAG00000020819 I 0.813
ENSAPLG00000003589 Anas platyrhynchos ENSAPLG00000003589 I 0.813
ENSAMXG00000006146 Astyanax mexicanus ENSAMXG00000006146 I 0.813
ENSAMXG00000013302 Astyanax mexicanus ENSAMXG00000013302 I 0.813
YY2 Macaca mulatta ENSMMUG00000029197 I 0.813
ENSLAFG00000032414 Loxodonta africana ENSLAFG00000032414 I 0.813
ENSMODG00000013124 Monodelphis domestica ENSMODG00000013124 I 0.813
ENSOGAG00000006955 Otolemur garnettii ENSOGAG00000006955 I 0.813
ENSNLEG00000000999 Nomascus leucogenys ENSNLEG00000000999 I 0.813
ENSOCUG00000026938 Oryctolagus cuniculus ENSOCUG00000026938 I 0.813
ENSONIG00000000896 Oreochromis niloticus ENSONIG00000000896 I 0.813
ENSONIG00000020108 Oreochromis niloticus ENSONIG00000020108 I 0.813
ENSMPUG00000002931 Mustela putorius furo ENSMPUG00000002931 I 0.813
yy1a Oryzias latipes ENSORLG00000015640 I 0.813
Yy1 Mus musculus ENSMUSG00000021264 D 0.813
YY2 Oryzias latipes ENSORLG00000009449 I 0.813
ENSOANG00000005723 Ornithorhynchus anatinus ENSOANG00000005723 I 0.813
LCUP013338 Lucilia cuprina LCUP013338 I 0.810
NEMVEDRAFT_v1g118750 Nematostella vectensis NEMVEDRAFT_v1g118750 I 0.810
PHUM284920 Pediculus humanus PHUM284920 I 0.810
ENSSSCG00000030865 Sus scrofa ENSSSCG00000030865 I 0.807
ENSSSCG00000030818 Sus scrofa ENSSSCG00000030818 I 0.807
ACYPI007734 Acyrthosiphon pisum ACYPI007734 I 0.807
YY2 Tupaia belangeri ENSTBEG00000011527 I 0.805
Mbtps2 Mus musculus ENSMUSG00000046873 I 0.802
Yy2 Mus musculus ENSMUSG00000091736 I 0.802
TYY2_RAT Rattus norvegicus TYY2_RAT D 0.802
ENSDORG00000009642 Dipodomys ordii ENSDORG00000009642 I 0.801
ENSAMEG00000016465 Ailuropoda melanoleuca ENSAMEG00000016465 I 0.798
YY2 Erinaceus europaeus ENSEEUG00000010704 I 0.797
csin103138 Clonorchis sinensis csin103138 I 0.795
YY2 Monodelphis domestica ENSMODG00000028019 I 0.795
pho Drosophila melanogaster FBgn0002521 D 0.795
GJ12430 Drosophila virilis FBgn0199672 I 0.795
GK13655 Drosophila willistoni FBgn0215663 I 0.795
T265_10224 Opisthorchis viverrini T265_10224 I 0.795
GE14485 Drosophila yakuba FBgn0232089 I 0.795
GM13006 Drosophila sechellia FBgn0167937 I 0.795
GH23956 Drosophila grimshawi FBgn0131413 I 0.795
GG16416 Drosophila erecta FBgn0108648 I 0.795
pho Drosophila simulans FBgn0067492 I 0.795
DILT_0000781101 Diphyllobothrium latum DILT_0000781101 I 0.793
D915_12088 Fasciola hepatica D915_12088 I 0.790
SCUD_0001683801 Schistosoma curassoni SCUD_0001683801 I 0.790
HmN_000280700 Hymenolepis microstoma HmN_000280700 I 0.790
SMTD_0001163901 Schistosoma mattheei SMTD_0001163901 I 0.790
HNAJ_0000292901 Hymenolepis nana HNAJ_0000292901 I 0.790
A_01567 Schistosoma haematobium A_01567 I 0.790
ECPE_0001146401 Echinostoma caproni ECPE_0001146401 I 0.790
SROB_0002127201 Schistosoma rodhaini SROB_0002127201 I 0.790
TsM_000985500 Taenia solium TsM_000985500 I 0.790
ECANG7_03870 Echinococcus canadensis ECANG7_03870 I 0.790
TTAC_0000757501 Hydatigera taeniaeformis TTAC_0000757501 I 0.790
TRE_0001085901 Trichobilharzia regenti TRE_0001085901 I 0.790
TASK_0000670101 Taenia asiatica TASK_0000670101 I 0.790
EmuJ_000476600 Echinococcus multilocularis EmuJ_000476600 I 0.790
Smp_023990 Schistosoma mansoni Smp_023990 I 0.790
ENSSHAG00000010068 Sarcophilus harrisii ENSSHAG00000010068 I 0.783
MCOS_0000134601 Mesocestoides corti MCOS_0000134601 I 0.781
YY2 Equus caballus ENSECAG00000014804 I 0.780
GF24664 Drosophila ananassae FBgn0101657 I 0.765
GH16213 Drosophila grimshawi FBgn0123684 I 0.765
GI13359 Drosophila mojavensis FBgn0136116 I 0.765
GG14036 Drosophila erecta FBgn0106298 I 0.765
GA17456 Drosophila pseudoobscura FBgn0077467 I 0.765
phol Drosophila melanogaster FBgn0035997 D 0.765
GL17968 Drosophila persimilis FBgn0155571 I 0.765
GM24870 Drosophila sechellia FBgn0179732 I 0.765
GE21239 Drosophila yakuba FBgn0238511 I 0.765
GK20506 Drosophila willistoni FBgn0222503 I 0.765
GJ13188 Drosophila virilis FBgn0200414 I 0.765
GD12921 Drosophila simulans FBgn0184646 I 0.765
LCUP010826 Lucilia cuprina LCUP010826 I 0.763
MDOA004058 Musca domestica MDOA004058 I 0.763