Pavir.Cb00699 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.Cb00699 T143327_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Cb00699.1.p C2H2 ZF 52 74
Pavir.Cb00699.1.p C2H2 ZF 102 121

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA033524 Oryza indica BGIOSGA033524 I 0.796
OB11G27860 Oryza brachyantha OB11G27860 I 0.796
OBART11G23480 Oryza barthii OBART11G23480 I 0.796
OPUNC11G19830 Oryza punctata OPUNC11G19830 I 0.796
ORGLA11G0188100 Oryza glaberrima ORGLA11G0188100 I 0.796
ORUFI11G25330 Oryza rufipogon ORUFI11G25330 I 0.796
OS11G0702400 Oryza sativa OS11G0702400 I 0.796
Pavir.Da00814 Panicum virgatum Pavir.Da00814 I 0.784
Pavir.Da00815 Panicum virgatum Pavir.Da00815 I 0.784
Si026973m.g Setaria italica Si026973m.g I 0.783
Si027432m.g Setaria italica Si027432m.g I 0.783
Pavir.J30713 Panicum virgatum Pavir.J30713 I 0.779
F775_14723 Aegilops tauschii F775_14723 I 0.778
GRMZM2G338056 Zea mays GRMZM2G338056 I 0.778
Traes_4DS_276818E4F Triticum aestivum Traes_4DS_276818E4F I 0.778
Pavir.J14296 Panicum virgatum Pavir.J14296 I 0.778
Pavir.Da01563 Panicum virgatum Pavir.Da01563 I 0.777
Pavir.Ha00194 Panicum virgatum Pavir.Ha00194 I 0.777
Pavir.Hb00003 Panicum virgatum Pavir.Hb00003 I 0.777
Pavir.Hb00056 Panicum virgatum Pavir.Hb00056 I 0.777
Sb05g027450 Sorghum bicolor Sb05g027450 I 0.773
BRADI4G09410 Brachypodium distachyon BRADI4G09410 I 0.772
MLOC_76196 Hordeum vulgare MLOC_76196 I 0.772
F775_30896 Aegilops tauschii F775_30896 I 0.765
GSMUA_Achr11G23970_001 Musa acuminata GSMUA_Achr11G23970_001 I 0.765
TRIUR3_01060 Triticum urartu TRIUR3_01060 I 0.765
MLOC_14920 Hordeum vulgare MLOC_14920 I 0.763
Traes_5DL_4B4927090 Triticum aestivum Traes_5DL_4B4927090 I 0.763
GSMUA_Achr10G06730_001 Musa acuminata GSMUA_Achr10G06730_001 I 0.762
F775_08752 Aegilops tauschii F775_08752 I 0.759