CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
pp-1
(
Neurospora crassa
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
NCU00340
T144838_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
pp-1
M01870_2.00
Neurospora crassa
NVCCCCTKDN
NHMAGGGGBN
PBM
Weirauch et al.(2014)
pTH8626
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.755
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01870_2.00
C2H2 ZF
52
76
HSCPIPSCGRVFKRLEHLKRHVRTH
M01870_2.00
C2H2 ZF
82
104
YVCSYCQKAFSRSDNLAQHKRTH
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
NCU00340
C2H2 ZF
591
615
HSCPIPSCGRVFKRLEHLKRHVRTH
NCU00340
C2H2 ZF
621
643
YVCSYCQKAFSRSDNLAQHKRTH
Links
Other
C2H2 ZF
family TFs
Other
Neurospora crassa
TFs
5 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
H102_04265
Trichophyton rubrum
H102_04265
I
0.788
H105_04290
Trichophyton soudanense
H105_04290
I
0.788
e_gw1.7.469.1
Tremella mesenterica
e_gw1.7.469.1
I
0.786
L804_04848
Cryptococcus gattii
L804_04848
I
0.762
gw1.66.31.1
Phycomyces blakesleeanus
gw1.66.31.1
I
0.762