D917_03163 (Trichinella nativa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 D917_03163 T152851_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
sob
M03674_2.00 		Drosophila melanogaster
RCTACYGNRTTACGCV
BGCGTAAYNCRGTAGY		 SELEX
Nitta et al.(2015)
sob_1 		0.760 0.783
sob
M03675_2.00 		Drosophila melanogaster
NGCGTAABNSNRGTAGY
RCTACYNSNVTTACGCN		 SELEX
Nitta et al.(2015)
sob_2 		0.760 0.783
sob
M06088_2.00 		Drosophila melanogaster
GCTWCTGBDNBDV
BHVNHVCAGWAGC		 B1H
Zhu et al.(2011)
sob_SANGER_10_FBgn0004892 		0.760 0.783
sob
M06089_2.00 		Drosophila melanogaster
BDGCTACYGKDBNN
NNVHMCRGTAGCHV		 B1H
Zhu et al.(2011)
sob_SOLEXA_5_FBgn0004892 		0.760 0.783
bowl
M03676_2.00 		Drosophila melanogaster
GCGTAABACNRGKAGYN
NRCTMCYNGTVTTACGC		 SELEX
Nitta et al.(2015)
bowl_1 		0.760 0.774
bowl
M03677_2.00 		Drosophila melanogaster
NGCTACYGTRTTACGCN
NGCGTAAYACRGTAGCN		 SELEX
Nitta et al.(2015)
bowl_2 		0.760 0.774
bowl
M06090_2.00 		Drosophila melanogaster
RCTWCYGK
MCRGWAGY		 B1H
Zhu et al.(2011)
bowl_SANGER_5_FBgn0004893 		0.760 0.774
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
D917_03163 C2H2 ZF 163 185
D917_03163 C2H2 ZF 191 213
D917_03163 C2H2 ZF 219 241
D917_03163 C2H2 ZF 247 269
D917_03163 C2H2 ZF 275 299

Links

Other C2H2 ZF family TFs
Other Trichinella nativa TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
EFV49300 Trichinella spiralis EFV49300 I 0.827
D917_07818 Trichinella nativa D917_07818 I 0.827
D918_06612 Trichuris suis D918_06612 N 0.779
TTRE_0000185401 Trichuris trichiura TTRE_0000185401 N 0.779
PHUM125080 Pediculus humanus PHUM125080 I 0.763
AAEL008961 Aedes aegypti AAEL008961 I 0.760
ACEP20581 Atta cephalotes ACEP20581 I 0.760
ACYPI007518 Acyrthosiphon pisum ACYPI007518 I 0.760
ODR1 Anopheles gambiae AGAP007973 I 0.760
ODR2 Anopheles gambiae AGAP008222 I 0.760
DAPPUDRAFT_238529 Daphnia pulex DAPPUDRAFT_238529 I 0.760
DAPPUDRAFT_347540 Daphnia pulex DAPPUDRAFT_347540 I 0.760
sob Drosophila melanogaster FBgn0004892 D 0.760
bowl Drosophila melanogaster FBgn0004893 D 0.760
GA10014 Drosophila pseudoobscura FBgn0070073 I 0.760
GF14663 Drosophila ananassae FBgn0091690 I 0.760
GF15254 Drosophila ananassae FBgn0092279 I 0.760
GG24427 Drosophila erecta FBgn0116559 I 0.760
GG24967 Drosophila erecta FBgn0117096 I 0.760
GH13192 Drosophila grimshawi FBgn0120669 I 0.760
GH13710 Drosophila grimshawi FBgn0121186 I 0.760
GI17769 Drosophila mojavensis FBgn0140510 I 0.760
GI23940 Drosophila mojavensis FBgn0146665 I 0.760
GL18676 Drosophila persimilis FBgn0156277 I 0.760
GL19470 Drosophila persimilis FBgn0157069 I 0.760
GM18136 Drosophila sechellia FBgn0173043 I 0.760
GM18435 Drosophila sechellia FBgn0173342 I 0.760
GD22744 Drosophila simulans FBgn0194140 I 0.760
GD23254 Drosophila simulans FBgn0194642 I 0.760
GJ17594 Drosophila virilis FBgn0204764 I 0.760
GJ21213 Drosophila virilis FBgn0208346 I 0.760
GK14650 Drosophila willistoni FBgn0216656 I 0.760
GK15478 Drosophila willistoni FBgn0217483 I 0.760
GE14841 Drosophila yakuba FBgn0232433 I 0.760
GE18258 Drosophila yakuba FBgn0235686 I 0.760
GA25976 Drosophila pseudoobscura FBgn0247353 I 0.760
GB49901 Apis mellifera GB49901 I 0.760
GB49914 Apis mellifera GB49914 I 0.760
KGM_20290 Danaus plexippus KGM_20290 I 0.760
L798_02536 Zootermopsis nevadensis L798_02536 I 0.760
MCINX006060 Melitaea cinxia MCINX006060 I 0.760
NV12185 Nasonia vitripennis NV12185 I 0.760
NV12189 Nasonia vitripennis NV12189 I 0.760
PHUM445550 Pediculus humanus PHUM445550 I 0.760
SINV17987 Solenopsis invicta SINV17987 I 0.760
SINV18115 Solenopsis invicta SINV18115 I 0.760
TC005784 Tribolium castaneum TC005784 I 0.760
TC005788 Tribolium castaneum TC005788 I 0.760
YQE_05719 Dendroctonus ponderosae YQE_05719 I 0.760
Cflo_02191--XP_393879.3_APIME Camponotus floridanus Cflo_02191--XP_393879.3_APIME I 0.760
LCUP002070 Lucilia cuprina LCUP002070 I 0.760
LCUP002077 Lucilia cuprina LCUP002077 I 0.760
AATE001257 Anopheles atroparvus AATE001257 I 0.760
ACOM030727 Anopheles coluzzii ACOM030727 I 0.760
AEPI004813 Anopheles epiroticus AEPI004813 I 0.760
AFAF004720 Anopheles farauti AFAF004720 I 0.760
AFUN006320 Anopheles funestus AFUN006320 I 0.760
AMEC005957 Anopheles melas AMEC005957 I 0.760
AMEM017192 Anopheles merus AMEM017192 I 0.760
AMIN006295 Anopheles minimus AMIN006295 I 0.760
ASTEI01738 Anopheles stephensi ASTEI01738 I 0.760
MDOA005526 Musca domestica MDOA005526 I 0.760
MDOA011451 Musca domestica MDOA011451 I 0.760
CpipJ_CPIJ010652 Culex pipiens CpipJ_CPIJ010652 I 0.758
AAEL007453 Aedes aegypti AAEL007453 I 0.758
ACYPI008391 Acyrthosiphon pisum ACYPI008391 I 0.758
CPIJ010652 Culex quinquefasciatus CPIJ010652 I 0.758
Cflo_02188--XP_001120905.1_APIME Camponotus floridanus Cflo_02188--XP_001120905.1_APIME I 0.758
PHUM125070 Pediculus humanus PHUM125070 I 0.757