CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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genemark-nMf.1.1.scaf15253-processed-gene-0.1
(
Meloidogyne floridensis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
genemark-nMf.1.1.scaf15253-processed-gene-0.1
T153539_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
genemark-nMf.1.1.scaf15253-processed-gene-0.1-mRNA-1
C2H2 ZF
98
118
IKCSFCPKKLPGQNALQLHLE
genemark-nMf.1.1.scaf15253-processed-gene-0.1-mRNA-1
C2H2 ZF
126
148
HECDLCGKRFKARGGLQQHNRIH
genemark-nMf.1.1.scaf15253-processed-gene-0.1-mRNA-1
C2H2 ZF
153
174
PYIYCPKRFTQKSHVDQHERIH
genemark-nMf.1.1.scaf15253-processed-gene-0.1-mRNA-1
C2H2 ZF
180
202
FACQFCGRQFRQRSQQLGHEATH
Links
Other
C2H2 ZF
family TFs
Other
Meloidogyne floridensis
TFs
2 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Minc18911
Meloidogyne incognita
Minc18911
N
0.810
maker-nMf.1.1.scaf04301-augustus-gene-0.7
Meloidogyne floridensis
maker-nMf.1.1.scaf04301-augustus-gene-0.7
N
0.810