CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MhA1_Contig684.frz3.gene34
(
Meloidogyne hapla
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
MhA1_Contig684.frz3.gene34
T154991_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MhA1_Contig684.frz3.gene34
C2H2 ZF
115
138
FKCPKCEKQFKTGRYLRKHFNQIH
MhA1_Contig684.frz3.gene34
C2H2 ZF
152
176
YLCNWPLCDKSFVSSSKLEGHLNSH
MhA1_Contig684.frz3.gene34
C2H2 ZF
182
205
YGCEHCGKNFSVKYELNRHLQKYH
Links
Other
C2H2 ZF
family TFs
Other
Meloidogyne hapla
TFs
2 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Minc03487
Meloidogyne incognita
Minc03487
N
0.787
maker-nMf.1.1.scaf03648-augustus-gene-0.6
Meloidogyne floridensis
maker-nMf.1.1.scaf03648-augustus-gene-0.6
N
0.787