nLs.2.1.2.g07946 (Litomosoides sigmodontis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 nLs.2.1.2.g07946 T155353_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
sptf-3
M00632_2.00 		Caenorhabditis elegans
NNMCGCCCMY
RKGGGCGKNN		 PBM
Narasimhan et al.(2015)
pTH9394 		0.824 0.942
Sp1
M00765_2.00 		Mus musculus
NMCGCCCMY
RKGGGCGKN		 PBM
Weirauch et al.(2013)
pTH0978 		0.766 0.768
SP1
M02921_2.00 		Homo sapiens
RCCMCDCCCMH
DKGGGHGKGGY		 SELEX
Jolma et al.(2013)
SP1_1 		0.766 0.768
SP1
M04605_2.00 		Homo sapiens
NWRRCCACGCCCMCH
DGKGGGCGTGGYYWN		 SELEX
Yin et al.(2017)
SP1_eDBD_HT-SELEX 		0.766 0.768
SP1
M08096_2.00 		Homo sapiens
BYCCCKCCCCY
RGGGGMGGGRV		 ChIP-seq
Mathelier et al.(2014)
MA0079.3 		0.766 0.768
SP1
M08363_2.00 		Homo sapiens
CCCHNBCYCCDCCCY
RGGGHGGRGVNDGGG		 ChIP-seq
Schmitges et al.(2016)
P08047.MEME 		0.766 0.768
SP1
M08938_2.00 		Homo sapiens
BCSSSBCCHVGCCCCGCCCCYN
NRGGGGCGGGGCBDGGVSSSGV		 Misc
Kulakovskiy et al.(2013)
SP1_HUMAN.H11MO.0.A 		0.766 0.768
Sp1
M08963_2.00 		Mus musculus
CCCBKCYCCKCCCCCNBCYCSBSC
GSVSGRGVNGGGGGMGGRGMVGGG		 Misc
Kulakovskiy et al.(2013)
SP1_MOUSE.H11MO.0.A 		0.766 0.768
SP1
M10294_2.00 		Homo sapiens
DSCMHGCCYH
DRGGCDKGSH		 Transfac
Matys et al.(2006)
V$SP1_01 		0.766 0.768
SP1
M10295_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP1_02 		0.766 0.768
SP1
M10296_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP1_07 		0.766 0.768
SP1
M10297_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP1_08 		0.766 0.768
SP1
M10298_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP1_Q2_02 		0.766 0.768
SP1
M10299_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP1_Q3 		0.766 0.768
SP1
M10300_2.00 		Homo sapiens
VVCCCCGCCCMBN
NVKGGGCGGGGBB		 Transfac
Matys et al.(2006)
V$SP1_Q6 		0.766 0.768
SP1
M04606_2.00 		Homo sapiens
NWRGCCMCGCCCMYH
DRKGGGCGKGGCYWN		 SELEX
Yin et al.(2017)
SP1_eDBD_Methyl-HT-SELEX 		0.766 0.768
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nLs.2.1.2.t07946-RA C2H2 ZF 11 33
nLs.2.1.2.t07946-RA C2H2 ZF 39 63
nLs.2.1.2.t07946-RA C2H2 ZF 69 91

Links

Other C2H2 ZF family TFs
Other Litomosoides sigmodontis TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bm6499 Brugia malayi Bm6499 I 0.827
LOAG_01580 Loa loa LOAG_01580 I 0.827
WBGene00237583 Onchocerca volvulus WBGene00237583 I 0.827
BTMF_0000199301 Brugia timori BTMF_0000199301 I 0.827
EEL_0000517301 Elaeophora elaphi EEL_0000517301 I 0.827
nAv.1.0.1.g06936 Acanthocheilonema viteae nAv.1.0.1.g06936 I 0.827
nDi.2.2.2.g02202 Dirofilaria immitis nDi.2.2.2.g02202 I 0.827
nOo.2.0.1.g09582 Onchocerca ochengi nOo.2.0.1.g09582 I 0.827
CRE28577 Caenorhabditis remanei CRE28577 I 0.824
sptf-3 Caenorhabditis elegans WBGene00012735 D 0.824
ACOC_0001203801 Angiostrongylus costaricensis ACOC_0001203801 I 0.823
ANCCAN_00594 Ancylostoma caninum ANCCAN_00594 I 0.823
ANCCEY_05940 Ancylostoma ceylanicum ANCCEY_05940 I 0.823
ANCDUO_10264 Ancylostoma duodenale ANCDUO_10264 I 0.823
HCOI00688600 Haemonchus contortus HCOI00688600 I 0.823
HPBE_0001438901 Heligmosomoides bakeri HPBE_0001438901 I 0.823
HPLM_0000529101 Haemonchus placei HPLM_0000529101 I 0.823
NECAME_13378 Necator americanus NECAME_13378 I 0.823
ALUE_0000441701 Ascaris lumbricoides ALUE_0000441701 I 0.820
ASU_13052 Ascaris suum ASU_13052 I 0.820
GPUH_0001030801 Gongylonema pulchrum GPUH_0001030801 I 0.820
NBR_0001206901 Nippostrongylus brasiliensis NBR_0001206901 I 0.820
CBG20386 Caenorhabditis briggsae CBG20386 I 0.808
DICVIV_09031 Dictyocaulus viviparus DICVIV_09031 I 0.807
EVEC_0000041101 Enterobius vermicularis EVEC_0000041101 I 0.804
SMUV_0000007001 Syphacia muris SMUV_0000007001 I 0.804
MhA1_Contig599.frz3.gene7 Meloidogyne hapla MhA1_Contig599.frz3.gene7 I 0.795
WBGene00237584 Onchocerca volvulus WBGene00237584 I 0.793
nOo.2.0.1.g04030 Onchocerca ochengi nOo.2.0.1.g04030 I 0.793
ASIM_0001129301 Anisakis simplex ASIM_0001129301 I 0.788
DME_0000423301 Dracunculus medinensis DME_0000423301 I 0.787
augustus_masked-nMf.1.1.scaf01525-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf01525-processed-gene-0.0 I 0.786
GPLIN_000570600 Globodera pallida GPLIN_000570600 I 0.784
CapteG112714 Capitella teleta CapteG112714 I 0.773
SBAD_0000755901 Soboliphyme baturini SBAD_0000755901 I 0.773
BGLB011938 Biomphalaria glabrata BGLB011938 I 0.770
BXY_0564300 Bursaphelenchus xylophilus BXY_0564300 I 0.767
SP1 Anolis carolinensis ENSACAG00000000610 I 0.766
ENSAMEG00000012479 Ailuropoda melanoleuca ENSAMEG00000012479 I 0.766
ENSAPLG00000007170 Anas platyrhynchos ENSAPLG00000007170 I 0.766
SP1 Bos taurus ENSBTAG00000003021 I 0.766
SP1 Canis familiaris ENSCAFG00000006950 I 0.766
SP1 Choloepus hoffmanni ENSCHOG00000001703 I 0.766
SP1 Callithrix jacchus ENSCJAG00000018553 I 0.766
SP1 Cavia porcellus ENSCPOG00000023095 I 0.766
ENSCSAG00000005498 Chlorocebus sabaeus ENSCSAG00000005498 I 0.766
SP1 Dasypus novemcinctus ENSDNOG00000017346 I 0.766
ENSECAG00000020197 Equus caballus ENSECAG00000020197 I 0.766
SP1 Erinaceus europaeus ENSEEUG00000013568 I 0.766
SP1 Felis catus ENSFCAG00000030741 I 0.766
SP1 Homo sapiens ENSG00000185591 D 0.766
ENSGALG00000028401 Gallus gallus ENSGALG00000028401 I 0.766
SP1 Gorilla gorilla ENSGGOG00000012593 I 0.766
SP1 Loxodonta africana ENSLAFG00000018043 I 0.766
ENSMEUG00000004493 Macropus eugenii ENSMEUG00000004493 I 0.766
SP1 Myotis lucifugus ENSMLUG00000017303 I 0.766
SP1 Macaca mulatta ENSMMUG00000020036 I 0.766
Sp1 Mus musculus ENSMUSG00000001280 D 0.766
ENSNLEG00000017699 Nomascus leucogenys ENSNLEG00000017699 I 0.766
ENSOARG00000016514 Ovis aries ENSOARG00000016514 I 0.766
SP1 Oryctolagus cuniculus ENSOCUG00000004147 I 0.766
ENSONIG00000005121 Oreochromis niloticus ENSONIG00000005121 I 0.766
SP1 Ochotona princeps ENSOPRG00000000691 I 0.766
sp1 Oryzias latipes ENSORLG00000005195 I 0.766
ENSPANG00000018241 Papio anubis ENSPANG00000018241 I 0.766
SP1 Procavia capensis ENSPCAG00000004934 I 0.766
ENSPFOG00000007682 Poecilia formosa ENSPFOG00000007682 I 0.766
ENSPPYG00000004579 Pongo abelii ENSPPYG00000004579 I 0.766
ENSPSIG00000007013 Pelodiscus sinensis ENSPSIG00000007013 I 0.766
SP1 Pan troglodytes ENSPTRG00000005014 I 0.766
SP1 Pteropus vampyrus ENSPVAG00000012280 I 0.766
Sp1 Rattus norvegicus ENSRNOG00000014084 I 0.766
SP1 Sorex araneus ENSSARG00000013480 I 0.766
SP1 Sus scrofa ENSSSCG00000000272 I 0.766
ENSSTOG00000005928 Ictidomys tridecemlineatus ENSSTOG00000005928 I 0.766
SP1 Tupaia belangeri ENSTBEG00000010202 I 0.766
SP1 Taeniopygia guttata ENSTGUG00000015642 I 0.766
sp1 Tetraodon nigroviridis ENSTNIG00000007066 I 0.766
sp1 Takifugu rubripes ENSTRUG00000014305 I 0.766
ENSTSYG00000001068 Tarsius syrichta ENSTSYG00000001068 I 0.766
SP1 Tursiops truncatus ENSTTRG00000009591 I 0.766
ENSXMAG00000017829 Xiphophorus maculatus ENSXMAG00000017829 I 0.766
Aan_R009568 Calypte anna Aan_R009568 I 0.766
Alligator_sinensis_CCG005388.1 Alligator sinensis Alligator_sinensis_CCG005388.1 I 0.766
Cmyd_10006878 Chelonia mydas Cmyd_10006878 I 0.766
ENSBTAP00000003929-D1 Bos grunniens ENSBTAP00000003929-D1 I 0.766
ENSMMUP00000026353 Macaca fascicularis ENSMMUP00000026353 I 0.766
Gfo_R005030 Geospiza fortis Gfo_R005030 I 0.766
Myotis_brandtii_SP1_10022992 Myotis brandtii Myotis_brandtii_SP1_10022992 I 0.766
Ogr16979 Ophisaurus gracilis Ogr16979 I 0.766
Pvit_07435 Pogona vitticeps Pvit_07435 I 0.766
LDEC008345 Leptinotarsa decemlineata LDEC008345 I 0.766
RSKR_0000732300 Rhabditophanes kr3021 RSKR_0000732300 I 0.766
L596_g19604 Steinernema carpocapsae L596_g19604 I 0.764
L889_g32073 Steinernema feltiae L889_g32073 I 0.764
L892_g17070 Steinernema scapterisci L892_g17070 I 0.764
L893_g2044 Steinernema glaseri L893_g2044 I 0.764
L898_g7955 Steinernema monticolum L898_g7955 I 0.764
CGI_10013026 Crassostrea gigas CGI_10013026 I 0.763
Cflo_10237--XP_624316.2_APIME Camponotus floridanus Cflo_10237--XP_624316.2_APIME I 0.763
ACYPI008586 Acyrthosiphon pisum ACYPI008586 I 0.761
LLOJ008095 Lutzomyia longipalpis LLOJ008095 I 0.761
SPU_009831 Strongylocentrotus purpuratus SPU_009831 I 0.760
SPU_009832 Strongylocentrotus purpuratus SPU_009832 I 0.760
ENSPMAG00000000389 Petromyzon marinus ENSPMAG00000000389 I 0.759
CpipJ_CPIJ003609 Culex pipiens CpipJ_CPIJ003609 I 0.757
AAEL003875 Aedes aegypti AAEL003875 I 0.757
ADAC004751 Anopheles darlingi ADAC004751 I 0.757
AGAP004438 Anopheles gambiae AGAP004438 I 0.757
CPIJ003609 Culex quinquefasciatus CPIJ003609 I 0.757
SMAR004952 Strigamia maritima SMAR004952 I 0.757
CLEC006997 Cimex lectularius CLEC006997 I 0.757
LCUP000151 Lucilia cuprina LCUP000151 I 0.757
AALB008691 Anopheles albimanus AALB008691 I 0.757
AARA006360 Anopheles arabiensis AARA006360 I 0.757
AATE004178 Anopheles atroparvus AATE004178 I 0.757
ACHR002282 Anopheles christyi ACHR002282 I 0.757
ACUA022057 Anopheles culicifacies ACUA022057 I 0.757
AFAF018385 Anopheles farauti AFAF018385 I 0.757
AFUN009419 Anopheles funestus AFUN009419 I 0.757
AMAM018005 Anopheles maculatus AMAM018005 I 0.757
AMEM016115 Anopheles merus AMEM016115 I 0.757
AQUA008497 Anopheles quadriannulatus AQUA008497 I 0.757
ASIS011603 Anopheles sinensis ASIS011603 I 0.757
ASTEI04919 Anopheles stephensi ASTEI04919 I 0.757
EFV52785 Trichinella spiralis EFV52785 I 0.756
D917_06327 Trichinella nativa D917_06327 I 0.756