RSKR_0001095800 (Rhabditophanes kr3021)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 RSKR_0001095800 T155928_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
pat-9
M00620_2.00 		Caenorhabditis elegans
NDKTKTAAHN
NDTTAMAMHN		 PBM
Narasimhan et al.(2015)
pTH10808 		0.815 0.913
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
RSKR_0001095800.1 C2H2 ZF 84 106
RSKR_0001095800.1 C2H2 ZF 112 134

Links

Other C2H2 ZF family TFs
Other Rhabditophanes kr3021 TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CBG16356 Caenorhabditis briggsae CBG16356 I 0.815
CBN24586 Caenorhabditis brenneri CBN24586 I 0.815
CJA18352 Caenorhabditis japonica CJA18352 I 0.815
CRE27649 Caenorhabditis remanei CRE27649 I 0.815
pat-9 Caenorhabditis elegans WBGene00003933 D 0.815
ACOC_0000102201 Angiostrongylus costaricensis ACOC_0000102201 I 0.815
ANCCAN_18583 Ancylostoma caninum ANCCAN_18583 I 0.815
ANCDUO_07563 Ancylostoma duodenale ANCDUO_07563 I 0.815
BXY_0112400 Bursaphelenchus xylophilus BXY_0112400 I 0.815
DICVIV_12412 Dictyocaulus viviparus DICVIV_12412 I 0.815
Hba_14230 Heterorhabditis bacteriophora Hba_14230 I 0.815
HCOI01651000 Haemonchus contortus HCOI01651000 I 0.815
HPBE_0000071201 Heligmosomoides bakeri HPBE_0000071201 I 0.815
OESDEN_00376 Oesophagostomum dentatum OESDEN_00376 I 0.815
TELCIR_02513 Teladorsagia circumcincta TELCIR_02513 I 0.815
Ppa-ztf-19 Pristionchus pacificus PPA23683 I 0.809
scaffold450-EXSNAP2012.3 Pristionchus exspectatus scaffold450-EXSNAP2012.3 I 0.809
PTRK_0000759200 Parastrongyloides trichosuri PTRK_0000759200 I 0.798
SPAL_0001716000 Strongyloides papillosus SPAL_0001716000 I 0.798
SSTP_0001017800 Strongyloides stercoralis SSTP_0001017800 I 0.798
SVE_0378000 Strongyloides venezuelensis SVE_0378000 I 0.798
genemark-nMf.1.1.scaf00221-processed-gene-0.5 Meloidogyne floridensis genemark-nMf.1.1.scaf00221-processed-gene-0.5 I 0.797
MhA1_Contig1798.frz3.fgene1 Meloidogyne hapla MhA1_Contig1798.frz3.fgene1 I 0.797
GPLIN_000449900 Globodera pallida GPLIN_000449900 I 0.786
WBGene00238928 Onchocerca volvulus WBGene00238928 I 0.780
EVEC_0000241401 Enterobius vermicularis EVEC_0000241401 I 0.780
nLs.2.1.2.g04320 Litomosoides sigmodontis nLs.2.1.2.g04320 I 0.780
nOo.2.0.1.g07915 Onchocerca ochengi nOo.2.0.1.g07915 I 0.780
SMUV_0001033801 Syphacia muris SMUV_0001033801 I 0.780
TCLT_0000966901 Thelazia callipaeda TCLT_0000966901 I 0.780