CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
SROB_0001523701
(
Schistosoma rodhaini
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
SROB_0001523701
T156954_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SROB_0001523701-mRNA-1
C2H2 ZF
363
385
YQCDICFKRYSGMKSLKNHKLTH
SROB_0001523701-mRNA-1
C2H2 ZF
391
413
HKCSICGKAFLRADKMRLHEISH
SROB_0001523701-mRNA-1
C2H2 ZF
419
441
FECATCKQRFTRSDKLKIHHRTH
SROB_0001523701-mRNA-1
C2H2 ZF
447
469
YACTFCPKRFTRSDKLKIHERIH
SROB_0001523701-mRNA-1
C2H2 ZF
475
497
YECSHCGKCFARSDKRRLHEKTH
Links
Other
C2H2 ZF
family TFs
Other
Schistosoma rodhaini
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Smp_152900
Schistosoma mansoni
Smp_152900
N
0.827
A_00063
Schistosoma haematobium
A_00063
N
0.825
SCUD_0000308501
Schistosoma curassoni
SCUD_0000308501
N
0.825
SMRZ_0001945501
Schistosoma margrebowiei
SMRZ_0001945501
N
0.825
SMTD_0002087901
Schistosoma mattheei
SMTD_0002087901
N
0.825
TRE_0000243101
Trichobilharzia regenti
TRE_0000243101
N
0.823
ECPE_0001401001
Echinostoma caproni
ECPE_0001401001
N
0.821
csin101641
Clonorchis sinensis
csin101641
N
0.819
PXEA_0000554601
Protopolystoma xenopodis
PXEA_0000554601
N
0.817
SSLN_0001230301
Schistocephalus solidus
SSLN_0001230301
N
0.777