lin-28 (Caenorhabditis elegans)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 WBGene00003014 T165224_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Enables RNA binding activity and enzyme binding activity. Involved in several processes, including regulation of cell fate specification; regulation of development, heterochronic; and regulation of gene expression. Located in cytoplasm and nucleus. Is expressed in several structures, including body wall musculature; nervous system; pharynx; reproductive system; and somatic gonad precursor. Orthologous to human LIN28A (lin-28 homolog A) and LIN28B (lin-28 homolog B). [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
lin-28
M01209_2.00		 Caenorhabditis elegans
AAAATAAA
TTTATTTT		 PBM
Lambert et al.(2019)
pTH10625		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.700 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01209_2.00 CSD 22 89

DNA Binding Domains

Protein ID Domain From To Sequence
F02E9.2a CSD 53 120
F02E9.2b CSD 22 89

Links

Other CSD family TFs
Other Caenorhabditis elegans TFs

6 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CRE28214 Caenorhabditis remanei CRE28214 I 0.985
CJA35970 Caenorhabditis japonica CJA35970 I 0.970
CBN30196 Caenorhabditis brenneri CBN30196 I 0.970
CBN21642 Caenorhabditis brenneri CBN21642 I 0.970
CBG12720 Caenorhabditis briggsae CBG12720 I 0.970