CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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efl-3
(
Caenorhabditis elegans
)
E2F
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02319 (E2F_TDP)
IPR003316
WBGene00009899
T173582_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of gene expression. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II transcription regulator complex. Is expressed in developing hermaphrodite gonad; intestine; neurons; and ventral nerve cord. Orthologous to several human genes including E2F7 (E2F transcription factor 7). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
E2F8
M02959_2.00
Homo sapiens
TTTGGCGGGAAA
TTTCCCGCCAAA
SELEX
Jolma et al.(2013)
E2F8_1
0.463
0.463
E2F8
M04703_2.00
Homo sapiens
WDKTGGCGGGARNN
NNYTCCCGCCAMHW
SELEX
Yin et al.(2017)
E2F8_eDBD_HT-SELEX
0.463
0.463
E2F8
M04704_2.00
Homo sapiens
WTTTGGCGGGAAWN
NWTTCCCGCCAAAW
SELEX
Yin et al.(2017)
E2F8_eDBD_Methyl-HT-SELEX
0.463
0.463
E2F7
M02960_2.00
Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW
SELEX
Jolma et al.(2013)
E2F7_1
0.455
0.455
E2F7
M04705_2.00
Homo sapiens
WTTTGGCGGGAAAN
NTTTCCCGCCAAAW
SELEX
Yin et al.(2017)
E2F7_eDBD_HT-SELEX
0.455
0.455
E2F7
M09033_2.00
Homo sapiens
NDGGCGGGRRNDV
BHNYYCCCGCCHN
Misc
Kulakovskiy et al.(2013)
E2F7_HUMAN.H11MO.0.B
0.455
0.455
E2f7
M09040_2.00
Mus musculus
NDGGCGGGRRNDV
BHNYYCCCGCCHN
Misc
Kulakovskiy et al.(2013)
E2F7_MOUSE.H11MO.0.C
0.455
0.455
E2F7
M09522_2.00
Homo sapiens
NSGCGSGAAMNN
NNKTTCSCGCSN
Misc
Heinz et al.(2010)
Hela-E2F7_GSE32673
0.455
0.455
E2F7
M04706_2.00
Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW
SELEX
Yin et al.(2017)
E2F7_eDBD_Methyl-HT-SELEX
0.455
0.455
For this family, TFs with SR scores >
0.429
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
F49E12.6
E2F
96
164
KEKSLGLLCQRFLIAINEETVGSSTREVHLETVARKMNVEKRRIYDIVNVMEALDAMQKTNKSYYQWQG
F49E12.6
E2F
257
338
GRNSLAQLCRRFLMVLLSNPKNIRKVSLDVASTVLIKDPETEGFEPPSRSRCRRLYDIANVLVALGLIKKVHYLFGTKKIPL
Links
Other
E2F
family TFs
Other
Caenorhabditis elegans
TFs
190 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CJA26768
Caenorhabditis japonica
CJA26768
I
0.970
CBN23380
Caenorhabditis brenneri
CBN23380
I
0.963
CRE01589
Caenorhabditis remanei
CRE01589
I
0.956
HCOI01892600
Haemonchus contortus
HCOI01892600
I
0.955
CBG00680
Caenorhabditis briggsae
CBG00680
I
0.948
DICVIV_01764
Dictyocaulus viviparus
DICVIV_01764
I
0.940
TELCIR_03927
Teladorsagia circumcincta
TELCIR_03927
I
0.940
HPBE_0000610601
Heligmosomoides bakeri
HPBE_0000610601
I
0.910
ANCCAN_04600
Ancylostoma caninum
ANCCAN_04600
I
0.910
ACAC_0000024001
Angiostrongylus cantonensis
ACAC_0000024001
I
0.903
CGOC_0000227901
Cylicostephanus goldi
CGOC_0000227901
N
0.813
TCNE_0000873901
Toxocara canis
TCNE_0000873901
I
0.813
OESDEN_13289
Oesophagostomum dentatum
OESDEN_13289
I
0.807
SMUV_0000434101
Syphacia muris
SMUV_0000434101
I
0.806
PPA21298
Pristionchus pacificus
PPA21298
I
0.784
ASU_04096
Ascaris suum
ASU_04096
I
0.776
scaffold884-EXSNAP2012.1
Pristionchus exspectatus
scaffold884-EXSNAP2012.1
I
0.776
scaffold51-EXSNAP2012.35
Pristionchus exspectatus
scaffold51-EXSNAP2012.35
I
0.776
ALUE_0000773501
Ascaris lumbricoides
ALUE_0000773501
I
0.776
L596_g12895
Steinernema carpocapsae
L596_g12895
I
0.769
L893_g19965
Steinernema glaseri
L893_g19965
I
0.765
augustus_masked-nMf.1.1.scaf10944-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf10944-processed-gene-0.0
I
0.763
ASIM_0001001801
Anisakis simplex
ASIM_0001001801
I
0.763
L889_g28422
Steinernema feltiae
L889_g28422
I
0.761
L892_g1818
Steinernema scapterisci
L892_g1818
I
0.761
Minc05731
Meloidogyne incognita
Minc05731
I
0.739
Minc04041
Meloidogyne incognita
Minc04041
I
0.739
MhA1_Contig130.frz3.gene44
Meloidogyne hapla
MhA1_Contig130.frz3.gene44
I
0.739
maker-nMf.1.1.scaf01659-augustus-gene-0.9
Meloidogyne floridensis
maker-nMf.1.1.scaf01659-augustus-gene-0.9
I
0.739
BXY_1693900
Bursaphelenchus xylophilus
BXY_1693900
I
0.731
L898_g3621
Steinernema monticolum
L898_g3621
I
0.724
OESDEN_14635
Oesophagostomum dentatum
OESDEN_14635
I
0.687
EVEC_0001263301
Enterobius vermicularis
EVEC_0001263301
N
0.612
WUBG_01805
Wuchereria bancrofti
WUBG_01805
N
0.597
LOAG_07147
Loa loa
LOAG_07147
N
0.590
nDi.2.2.2.g08162
Dirofilaria immitis
nDi.2.2.2.g08162
N
0.586
OFLC_0000212001
Onchocerca flexuosa
OFLC_0000212001
N
0.586
nLs.2.1.2.g03748
Litomosoides sigmodontis
nLs.2.1.2.g03748
N
0.583
SVUK_0001371201
Strongylus vulgaris
SVUK_0001371201
I
0.582
Bm4234
Brugia malayi
Bm4234
N
0.582
TELCIR_22846
Teladorsagia circumcincta
TELCIR_22846
I
0.582
WBGene00247952
Onchocerca volvulus
WBGene00247952
N
0.582
nOo.2.0.1.g06441
Onchocerca ochengi
nOo.2.0.1.g06441
N
0.582
TCLT_0000737401
Thelazia callipaeda
TCLT_0000737401
N
0.552
DME_0000727201
Dracunculus medinensis
DME_0000727201
I
0.530
NECAME_17546
Necator americanus
NECAME_17546
N
0.507
ISCW021939
Ixodes scapularis
ISCW021939
I
0.478
ENSPSIG00000008707
Pelodiscus sinensis
ENSPSIG00000008707
I
0.470
ENSONIG00000012070
Oreochromis niloticus
ENSONIG00000012070
I
0.463
ENSCSAG00000005093
Chlorocebus sabaeus
ENSCSAG00000005093
I
0.463
Cmyd_10016427
Chelonia mydas
Cmyd_10016427
I
0.463
ENSGALG00000004023
Gallus gallus
ENSGALG00000004023
I
0.463
E2F8
Homo sapiens
ENSG00000129173
D
0.463
Afo_R006642
Aptenodytes forsteri
Afo_R006642
I
0.463
ENSAPLG00000009091
Anas platyrhynchos
ENSAPLG00000009091
I
0.463
e2f8.L
Xenopus laevis
XB-GENE-1219153
I
0.463
ENSNLEG00000017803
Nomascus leucogenys
ENSNLEG00000017803
I
0.463
Pvit_10252
Pogona vitticeps
Pvit_10252
I
0.463
E2F8
Pan troglodytes
ENSPTRG00000003435
I
0.463
E2F8
Tursiops truncatus
ENSTTRG00000005707
I
0.463
ENSPPYG00000003424
Pongo abelii
ENSPPYG00000003424
I
0.463
ENSLOCG00000016279
Lepisosteus oculatus
ENSLOCG00000016279
I
0.463
Gfo_R003976
Geospiza fortis
Gfo_R003976
I
0.463
Aan_R006648
Calypte anna
Aan_R006648
I
0.456
ENSPANG00000005225
Papio anubis
ENSPANG00000005225
I
0.456
NV16280
Nasonia vitripennis
NV16280
I
0.456
ENSSHAG00000018372
Sarcophilus harrisii
ENSSHAG00000018372
I
0.456
E2F8
Macaca mulatta
ENSMMUG00000010853
I
0.456
Ogr19156
Ophisaurus gracilis
Ogr19156
I
0.456
Tal_R008430
Tyto alba
Tal_R008430
I
0.456
XP_002942881
Xenopus tropicalis
XP_002942881
I
0.456
E2F8
Monodelphis domestica
ENSMODG00000009029
I
0.456
ENSP00000379463
Macaca fascicularis
ENSP00000379463
I
0.456
Alligator_sinensis_CCG013467.1
Alligator sinensis
Alligator_sinensis_CCG013467.1
I
0.456
ENSSTOG00000008838
Ictidomys tridecemlineatus
ENSSTOG00000008838
I
0.455
Aan_R005623
Calypte anna
Aan_R005623
I
0.455
E2F7
Taeniopygia guttata
ENSTGUG00000007515
I
0.455
Tal_R000495
Tyto alba
Tal_R000495
I
0.455
Alligator_sinensis_CCG013028.2
Alligator sinensis
Alligator_sinensis_CCG013028.2
I
0.455
ENSSHAG00000002919
Sarcophilus harrisii
ENSSHAG00000002919
I
0.455
Alligator_sinensis_CCG013028.1
Alligator sinensis
Alligator_sinensis_CCG013028.1
I
0.455
e2f7
Takifugu rubripes
ENSTRUG00000001843
I
0.455
E2F8
Sus scrofa
ENSSSCG00000013352
I
0.455
Myotis_brandtii_E2F8_10018668
Myotis brandtii
Myotis_brandtii_E2F8_10018668
I
0.455
Cmyd_10011734
Chelonia mydas
Cmyd_10011734
I
0.455
LotgiG168338
Lottia gigantea
LotgiG168338
I
0.455
Brh_R011115
Buceros rhinoceros
Brh_R011115
I
0.455
ENSBTAP00000022518-D1
Bos grunniens
ENSBTAP00000022518-D1
I
0.455
E2F7
Vicugna pacos
ENSVPAG00000011151
I
0.455
Brh_R005316
Buceros rhinoceros
Brh_R005316
I
0.455
ENSTSYG00000008243
Tarsius syrichta
ENSTSYG00000008243
I
0.455
Afo_R014077
Aptenodytes forsteri
Afo_R014077
I
0.455
ENSTSYG00000007279
Tarsius syrichta
ENSTSYG00000007279
I
0.455
E2f8
Rattus norvegicus
ENSRNOG00000022537
I
0.455
ENSOARG00000014941
Ovis aries
ENSOARG00000014941
I
0.455
ENSOARG00000008807
Ovis aries
ENSOARG00000008807
I
0.455
ENSLACG00000016113
Latimeria chalumnae
ENSLACG00000016113
I
0.455
E2F8
Oryctolagus cuniculus
ENSOCUG00000004485
I
0.455
E2F8
Otolemur garnettii
ENSOGAG00000005774
I
0.455
ENSFALG00000001625
Ficedula albicollis
ENSFALG00000001625
I
0.455
ENSFALG00000010433
Ficedula albicollis
ENSFALG00000010433
I
0.455
E2F8
Felis catus
ENSFCAG00000010706
I
0.455
E2F7
Loxodonta africana
ENSLAFG00000017902
I
0.455
E2f8
Mus musculus
ENSMUSG00000046179
I
0.455
E2F8
Pteropus vampyrus
ENSPVAG00000012522
I
0.455
E2F8
Myotis lucifugus
ENSMLUG00000015592
I
0.455
E2F8
Meleagris gallopavo
ENSMGAG00000002303
I
0.455
E2F7
Monodelphis domestica
ENSMODG00000020465
I
0.455
ENSMPUG00000013899
Mustela putorius furo
ENSMPUG00000013899
I
0.455
E2F8
Loxodonta africana
ENSLAFG00000022713
I
0.455
ENSMEUG00000008461
Macropus eugenii
ENSMEUG00000008461
I
0.455
E2F8
Erinaceus europaeus
ENSEEUG00000011472
I
0.455
E2F7
Echinops telfairi
ENSETEG00000014750
I
0.455
ENSPSIG00000012629
Pelodiscus sinensis
ENSPSIG00000012629
I
0.455
E2F7
Bos taurus
ENSBTAG00000016931
I
0.455
E2F7
Canis familiaris
ENSCAFG00000005718
I
0.455
E2F8
Cavia porcellus
ENSCPOG00000013766
I
0.455
E2F8
Canis familiaris
ENSCAFG00000009431
I
0.455
ENSPMAG00000001858
Petromyzon marinus
ENSPMAG00000001858
I
0.455
ENSAMEG00000017950
Ailuropoda melanoleuca
ENSAMEG00000017950
I
0.455
E2F7
Dasypus novemcinctus
ENSDNOG00000001580
I
0.455
E2F8
Dasypus novemcinctus
ENSDNOG00000003349
I
0.455
E2F8
Callithrix jacchus
ENSCJAG00000006811
I
0.449
CapteG198117
Capitella teleta
CapteG198117
I
0.449
E2F7
Anolis carolinensis
ENSACAG00000005414
I
0.449
ENSAMEG00000007247
Ailuropoda melanoleuca
ENSAMEG00000007247
I
0.449
E2F7
Cavia porcellus
ENSCPOG00000007375
I
0.449
E2F7
Felis catus
ENSFCAG00000010756
I
0.449
ENSDORG00000003404
Dipodomys ordii
ENSDORG00000003404
I
0.449
ENSP00000323246
Macaca fascicularis
ENSP00000323246
I
0.449
E2F7
Homo sapiens
ENSG00000165891
D
0.449
E2F7
Gorilla gorilla
ENSGGOG00000012645
I
0.449
ENSECAG00000017963
Equus caballus
ENSECAG00000017963
I
0.449
ENSGMOG00000019253
Gadus morhua
ENSGMOG00000019253
I
0.449
ENSCSAG00000003998
Chlorocebus sabaeus
ENSCSAG00000003998
I
0.449
E2F7
Callithrix jacchus
ENSCJAG00000019162
I
0.449
Myotis_brandtii_E2F7_10034114
Myotis brandtii
Myotis_brandtii_E2F7_10034114
I
0.449
ENSPPYG00000004791
Pongo abelii
ENSPPYG00000004791
I
0.449
E2F7
Tupaia belangeri
ENSTBEG00000005417
I
0.449
ENSPANG00000004929
Papio anubis
ENSPANG00000004929
I
0.449
ENSSTOG00000007887
Ictidomys tridecemlineatus
ENSSTOG00000007887
I
0.449
E2F7
Pan troglodytes
ENSPTRG00000005245
I
0.449
E2f7
Rattus norvegicus
ENSRNOG00000026252
I
0.449
E2F7
Sorex araneus
ENSSARG00000004122
I
0.449
E2F7
Pteropus vampyrus
ENSPVAG00000000288
I
0.449
E2F7
Otolemur garnettii
ENSOGAG00000010821
I
0.449
E2F7
Tursiops truncatus
ENSTTRG00000000110
I
0.449
E2f7
Mus musculus
ENSMUSG00000020185
D
0.449
E2F7
Myotis lucifugus
ENSMLUG00000012116
I
0.449
ENSMPUG00000017468
Mustela putorius furo
ENSMPUG00000017468
I
0.449
ENSNLEG00000004897
Nomascus leucogenys
ENSNLEG00000004897
I
0.449
E2F7
Macaca mulatta
ENSMMUG00000022846
I
0.449
E2F7
Sus scrofa
ENSSSCG00000000950
I
0.448
e2f8
Tetraodon nigroviridis
ENSTNIG00000009615
I
0.448
ENSAPLG00000014506
Anas platyrhynchos
ENSAPLG00000014506
I
0.448
ENSPFOG00000003272
Poecilia formosa
ENSPFOG00000003272
I
0.448
E2F8
Ornithorhynchus anatinus
ENSOANG00000011290
I
0.448
e2f8
Oryzias latipes
ENSORLG00000000786
I
0.448
E2f8
Dipodomys ordii
ENSDORG00000000040
I
0.448
E2F7
Procavia capensis
ENSPCAG00000000596
I
0.448
HelroG187766
Helobdella robusta
HelroG187766
I
0.448
E2F7
Oryctolagus cuniculus
ENSOCUG00000004932
I
0.448
Gfo_R003950
Geospiza fortis
Gfo_R003950
I
0.448
gw1.8.144.1
Ostreococcus RCC809
gw1.8.144.1
I
0.448
ENSLOCG00000004831
Lepisosteus oculatus
ENSLOCG00000004831
I
0.448
E2F8
Anolis carolinensis
ENSACAG00000015743
I
0.448
Pvit_06409
Pogona vitticeps
Pvit_06409
I
0.448
E2F7
Ochotona princeps
ENSOPRG00000001896
I
0.448
ENSONIG00000007135
Oreochromis niloticus
ENSONIG00000007135
I
0.448
E2F8
Taeniopygia guttata
ENSTGUG00000015857
I
0.448
ENSXMAG00000006252
Xiphophorus maculatus
ENSXMAG00000006252
I
0.441
E2F8
Equus caballus
ENSECAG00000016457
I
0.441
E2F8
Choloepus hoffmanni
ENSCHOG00000006322
I
0.441
E2F8
Bos taurus
ENSBTAG00000017446
I
0.440
ENSBTAP00000023190-D1
Bos grunniens
ENSBTAP00000023190-D1
I
0.440
e2f7.L
Xenopus laevis
XB-GENE-1018449
I
0.440
E2F7
Meleagris gallopavo
ENSMGAG00000010943
I
0.440
ENSGALG00000010265
Gallus gallus
ENSGALG00000010265
I
0.440
ENSORLG00000012301
Oryzias latipes
ENSORLG00000012301
I
0.440
e2f8
Danio rerio
ENSDARG00000057323
I
0.440
e2f7
Danio rerio
ENSDARG00000008986
I
0.440
e2f8
Takifugu rubripes
ENSTRUG00000015792
I
0.434
e2f8
Gasterosteus aculeatus
ENSGACG00000017086
I
0.434
e2f7
Tetraodon nigroviridis
ENSTNIG00000005126
I
0.434
Ocbimv22037571m.g
Octopus bimaculoides
Ocbimv22037571m.g
I
0.433
CGI_10023548
Crassostrea gigas
CGI_10023548
I
0.433
ENSLACG00000014031
Latimeria chalumnae
ENSLACG00000014031
I
0.433
ENSXMAG00000010237
Xiphophorus maculatus
ENSXMAG00000010237
I
0.433
ENSAMXG00000016864
Astyanax mexicanus
ENSAMXG00000016864
I
0.433
ENSCING00000014484
Ciona intestinalis
ENSCING00000014484
I
0.433