Cagra.1390s0037 (Capsella grandiflora)
E2F

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02319 (E2F_TDP) IPR003316 Cagra.1390s0037 T173900_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
E2FD
M06875_2.00 		Arabidopsis thaliana
DWWHDDTTTTGGCGGGAAAW
WTTTCCCGCCAAAAHHDWWH		 Dap-seq
OMalley et al.(2016)
DEL2_col_a 		0.784 0.784
E2FD
M06876_2.00 		Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH		 Dap-seq
OMalley et al.(2016)
DEL2_colamp_a 		0.784 0.784
E2FD
M10442_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$E2L1_Q2 		0.784 0.784
E2FD
M10443_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$E2L_Q2 		0.784 0.784
E2FE
M01958_2.00 		Arabidopsis thaliana
HDSGCGCSHD
HDSGCGCSHD		 PBM
Weirauch et al.(2014)
pTH8176 		0.659 0.659
E2FE
M06873_2.00 		Arabidopsis thaliana
TTTTGGCGGGAAAWWNWNDDN
NHHNWNWWTTTCCCGCCAAAA		 Dap-seq
OMalley et al.(2016)
DEL1_col_a 		0.659 0.659
E2FE
M06874_2.00 		Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH		 Dap-seq
OMalley et al.(2016)
DEL1_colamp_a 		0.659 0.659
E2F7
M02960_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Jolma et al.(2013)
E2F7_1 		0.545 0.545
E2F7
M04705_2.00 		Homo sapiens
WTTTGGCGGGAAAN
NTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_HT-SELEX 		0.545 0.545
E2F7
M09033_2.00 		Homo sapiens
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_HUMAN.H11MO.0.B 		0.545 0.545
E2f7
M09040_2.00 		Mus musculus
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_MOUSE.H11MO.0.C 		0.545 0.545
E2F7
M09522_2.00 		Homo sapiens
NSGCGSGAAMNN
NNKTTCSCGCSN		 Misc
Heinz et al.(2010)
Hela-E2F7_GSE32673 		0.545 0.545
E2F7
M04706_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_Methyl-HT-SELEX 		0.545 0.545
E2F8
M02959_2.00 		Homo sapiens
TTTGGCGGGAAA
TTTCCCGCCAAA		 SELEX
Jolma et al.(2013)
E2F8_1 		0.523 0.523
E2F8
M04703_2.00 		Homo sapiens
WDKTGGCGGGARNN
NNYTCCCGCCAMHW		 SELEX
Yin et al.(2017)
E2F8_eDBD_HT-SELEX 		0.523 0.523
E2F8
M04704_2.00 		Homo sapiens
WTTTGGCGGGAAWN
NWTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F8_eDBD_Methyl-HT-SELEX 		0.523 0.523
For this family, TFs with SR scores > 0.429 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1390s0037.1.p E2F 10 26
Cagra.1390s0037.1.p E2F 91 170

Links

Other E2F family TFs
Other Capsella grandiflora TFs

103 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.1036s0060 Capsella grandiflora Cagra.1036s0060 I 0.841
Carubv10001291m.g Capsella rubella Carubv10001291m.g I 0.841
E2FD Arabidopsis thaliana AT5G14960 D 0.784
TCM_017926 Theobroma cacao TCM_017926 I 0.784
Solyc03g113760.2 Solanum lycopersicum Solyc03g113760.2 I 0.693
POPTR_0015s08160 Populus trichocarpa POPTR_0015s08160 I 0.682
Cucsa.098190 Cucumis sativus Cucsa.098190 I 0.682
SapurV1A.0161s0320 Salix purpurea SapurV1A.0161s0320 I 0.682
Bostr.18473s0137 Boechera stricta Bostr.18473s0137 I 0.670
Ciclev10020979m.g Citrus clementina Ciclev10020979m.g I 0.670
OBART06G09260 Oryza barthii OBART06G09260 I 0.659
POPTR_0012s07700 Populus trichocarpa POPTR_0012s07700 I 0.659
MTR_4g106540 Medicago truncatula MTR_4g106540 I 0.648
Solyc02g087310.2 Solanum lycopersicum Solyc02g087310.2 I 0.648
Cagra.4239s0004 Capsella grandiflora Cagra.4239s0004 I 0.648
Carubv10018365m.g Capsella rubella Carubv10018365m.g I 0.648
Carubv10014041m.g Capsella rubella Carubv10014041m.g I 0.625
Bostr.1460s0076 Boechera stricta Bostr.1460s0076 I 0.618
Lus10005840.g Linum usitatissimum Lus10005840.g N 0.614
orange1.1g042344m.g Citrus sinensis orange1.1g042344m.g N 0.602
E2FF Arabidopsis thaliana AT3G01330 I 0.596
OB06G18550 Oryza brachyantha OB06G18550 I 0.580
OMERI06G10800 Oryza meridionalis OMERI06G10800 I 0.580
PK09429.1 Cannabis sativa PK09429.1 N 0.580
CMT433C Cyanidioschyzon merolae CMT433C I 0.568
Traes_6AL_DD0E18465 Triticum aestivum Traes_6AL_DD0E18465 I 0.568
mg017600m Mimulus guttatus mg017600m N 0.568
mgf025923m Mimulus guttatus mgf025923m N 0.568
Pavir.Aa00738 Panicum virgatum Pavir.Aa00738 I 0.568
Thhalv10021032m.g Eutrema salsugineum Thhalv10021032m.g I 0.566
Bostr.2902s0230 Boechera stricta Bostr.2902s0230 I 0.559
Thhalv10013977m.g Eutrema salsugineum Thhalv10013977m.g I 0.559
ENSLACG00000014031 Latimeria chalumnae ENSLACG00000014031 I 0.557
Traes_7AS_D5F5D49CA Triticum aestivum Traes_7AS_D5F5D49CA I 0.557
Traes_7DS_791693792 Triticum aestivum Traes_7DS_791693792 I 0.557
Bra023497 Brassica rapa Bra023497 I 0.551
E2F7 Oryctolagus cuniculus ENSOCUG00000004932 I 0.545
OSTLU_42726 Ostreococcus lucimarinus OSTLU_42726 I 0.545
Pvit_10252 Pogona vitticeps Pvit_10252 I 0.545
Bo2g012280 Brassica oleracea Bo2g012280 I 0.544
Bo5g155250 Brassica oleracea Bo5g155250 I 0.544
Bra039127 Brassica rapa Bra039127 I 0.544
OGLUM02G32560 Oryza glumaepatula OGLUM02G32560 I 0.534
e2f7.L Xenopus laevis XB-GENE-1018449 I 0.534
E2f8 Mus musculus ENSMUSG00000046179 I 0.523
Alligator_sinensis_CCG013028.1 Alligator sinensis Alligator_sinensis_CCG013028.1 I 0.523
Alligator_sinensis_CCG013028.2 Alligator sinensis Alligator_sinensis_CCG013028.2 I 0.523
PDK_20s1507381g001 Phoenix dactylifera PDK_20s1507381g001 N 0.523
DEL2 Arabidopsis lyrata Al_scaffold_0006_1397 I 0.522
SPU_023346 Strongylocentrotus purpuratus SPU_023346 I 0.511
L798_00191 Zootermopsis nevadensis L798_00191 I 0.500
LotgiG168338 Lottia gigantea LotgiG168338 I 0.500
PGSC0003DMG400001296 Solanum tuberosum PGSC0003DMG400001296 I 0.500
Ciclev10018041m.g Citrus clementina Ciclev10018041m.g I 0.500
Gorai.006G027400 Gossypium raimondii Gorai.006G027400 I 0.500
cassava22158.valid.m1 Manihot esculenta cassava22158.valid.m1 I 0.493
ENSPMAG00000001858 Petromyzon marinus ENSPMAG00000001858 I 0.489
PITG_06416 Phytophthora infestans PITG_06416 I 0.489
XP_002164164.1 Hydra magnipapillata XP_002164164.1 I 0.489
Lus10039455.g Linum usitatissimum Lus10039455.g I 0.488
TCM_011971 Theobroma cacao TCM_011971 I 0.480
VIT_14s0066g02370 Vitis vinifera VIT_14s0066g02370 I 0.471
Eucgr.I01881 Eucalyptus grandis Eucgr.I01881 I 0.471
fgenesh1_pg.1__455 Bigelowiella natans fgenesh1_pg.1__455 I 0.466
PGSC0003DMG402024469 Solanum tuberosum PGSC0003DMG402024469 I 0.466
MDP0000258338 Malus domestica MDP0000258338 I 0.466
MDP0000311683 Malus domestica MDP0000311683 I 0.466
TRIUR3_05632 Triticum urartu TRIUR3_05632 I 0.461
OLONG_012839 Oryza longistaminata OLONG_012839 I 0.457
DEL1 Vitis vinifera VIT_17s0000g07630 I 0.456
30147.m014015 Ricinus communis 30147.m014015 I 0.456
cassava17583.valid.m1 Manihot esculenta cassava17583.valid.m1 I 0.456
Gorai.004G114000 Gossypium raimondii Gorai.004G114000 I 0.456
Pavir.Da01202 Panicum virgatum Pavir.Da01202 I 0.456
PK00080.1 Cannabis sativa PK00080.1 I 0.456
BGIOSGA022619 Oryza indica BGIOSGA022619 I 0.450
evm.TU.supercontig_35.34 Carica papaya evm.TU.supercontig_35.34 I 0.449
chr1.CM1956.640.nc Lotus japonicus chr1.CM1956.640.nc I 0.449
Traes_6DL_90C72AE92 Triticum aestivum Traes_6DL_90C72AE92 I 0.444
GLYMA05G01760 Glycine max GLYMA05G01760 I 0.441
GLYMA17G10130 Glycine max GLYMA17G10130 I 0.441
GSMUA_Achr7G02220_001 Musa acuminata GSMUA_Achr7G02220_001 I 0.441
29822.m003421 Ricinus communis 29822.m003421 I 0.441
mgf007657m Mimulus guttatus mgf007657m I 0.441
chr4.LjT30K03.50.nc Lotus japonicus chr4.LjT30K03.50.nc I 0.441
Bo1g074680 Brassica oleracea Bo1g074680 I 0.434
Bra033767 Brassica rapa Bra033767 I 0.434
F775_06335 Aegilops tauschii F775_06335 I 0.434
GLYMA06G19843 Glycine max GLYMA06G19843 I 0.434
GRMZM2G361659 Zea mays GRMZM2G361659 I 0.434
OB02G38920 Oryza brachyantha OB02G38920 I 0.434
PRUPE_ppa015063mg Prunus persica PRUPE_ppa015063mg I 0.434
Sb04g028440 Sorghum bicolor Sb04g028440 I 0.434
Sb10g008800 Sorghum bicolor Sb10g008800 I 0.434
Ca_15301 Cicer arietinum Ca_15301 I 0.434
Pm024664 Prunus mume Pm024664 I 0.434
cassava23001.valid.m1 Manihot esculenta cassava23001.valid.m1 I 0.434
gene03312-v1.0-hybrid Fragaria vesca gene03312-v1.0-hybrid I 0.434
Lus10032439.g Linum usitatissimum Lus10032439.g I 0.434
Lus10042941.g Linum usitatissimum Lus10042941.g I 0.434
SapurV1A.1521s0010 Salix purpurea SapurV1A.1521s0010 I 0.434
Thhalv10010430m.g Eutrema salsugineum Thhalv10010430m.g I 0.434
BRADI3G59740 Brachypodium distachyon BRADI3G59740 I 0.429