MDP0000311683 (Malus domestica)
E2F

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02319 (E2F_TDP) IPR003316 MDP0000311683 T173980_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
E2FC
M06870_2.00 		Arabidopsis thaliana
AWDDDGGCGCCAAAR
YTTTGGCGCCHHHWT		 Dap-seq
OMalley et al.(2016)
E2FC_col_a 		0.453 0.453
E2F4
M02961_2.00 		Homo sapiens
AATGGCGCCAAA
TTTGGCGCCATT		 SELEX
Jolma et al.(2013)
E2F4_1 		0.438 0.438
E2F4
M02962_2.00 		Homo sapiens
TTTGGCGCCAAA
TTTGGCGCCAAA		 SELEX
Jolma et al.(2013)
E2F4_2 		0.438 0.438
E2F4
M04707_2.00 		Homo sapiens
NWWKGGCGCCAAAW
WTTTGGCGCCMWWN		 SELEX
Yin et al.(2017)
E2F4_eDBD_HT-SELEX 		0.438 0.438
E2F4
M08109_2.00 		Homo sapiens
NSGCGGGARVN
NBYTCCCGCSN		 ChIP-seq
Mathelier et al.(2014)
MA0470.1 		0.438 0.438
E2F4
M07942_2.00 		Homo sapiens
SGCGSGARDNNBNVN
NBNVNNHYTCSCGCS		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_E2F4_UCD 		0.438 0.438
E2F4
M07943_2.00 		Homo sapiens
SGCGGGARDNNBVVN
NBBVNNHYTCCCGCS		 ChIP-seq
Gerstein et al.(2012)
K562b_E2F4_UCD 		0.438 0.438
E2F4
M09036_2.00 		Homo sapiens
VDRGGCGGGRVND
HNBYCCCGCCYHB		 Misc
Kulakovskiy et al.(2013)
E2F4_HUMAN.H11MO.0.A 		0.438 0.438
E2f4
M09037_2.00 		Mus musculus
NRDDGGCGGGRMNN
NNKYCCCGCCHHYN		 Misc
Kulakovskiy et al.(2013)
E2F4_MOUSE.H11MO.0.A 		0.438 0.438
E2f5
M09042_2.00 		Mus musculus
NGCGCSAAAN
NTTTSGCGCN		 Misc
Kulakovskiy et al.(2013)
E2F5_MOUSE.H11MO.0.B 		0.438 0.438
E2F4
M09524_2.00 		Homo sapiens
VGCGSGAADH
DHTTCSCGCB		 Misc
Heinz et al.(2010)
K562-E2F4_GSE31477 		0.438 0.438
E2F4
M10457_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F4_05 		0.438 0.438
E2F4
M10458_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F4_Q3 		0.438 0.438
E2F4
M10459_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F4_Q6 		0.438 0.438
For this family, TFs with SR scores > 0.429 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000311683 E2F 635 703

Links

Other E2F family TFs
Other Malus domestica TFs

224 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MDP0000258338 Malus domestica MDP0000258338 I 1.000
orange1.1g042344m.g Citrus sinensis orange1.1g042344m.g N 0.719
PDK_20s1507381g001 Phoenix dactylifera PDK_20s1507381g001 N 0.703
Traes_7AS_D5F5D49CA Triticum aestivum Traes_7AS_D5F5D49CA I 0.672
OMERI06G10800 Oryza meridionalis OMERI06G10800 I 0.672
OB06G18550 Oryza brachyantha OB06G18550 I 0.672
Traes_7DS_791693792 Triticum aestivum Traes_7DS_791693792 I 0.672
Traes_6AL_DD0E18465 Triticum aestivum Traes_6AL_DD0E18465 I 0.672
Pavir.Aa00738 Panicum virgatum Pavir.Aa00738 I 0.656
PK09429.1 Cannabis sativa PK09429.1 N 0.656
mgf025923m Mimulus guttatus mgf025923m N 0.625
mg017600m Mimulus guttatus mg017600m N 0.625
Lus10005840.g Linum usitatissimum Lus10005840.g N 0.606
E2FD Arabidopsis thaliana AT5G14960 D 0.594
MLOC_67050 Hordeum vulgare MLOC_67050 I 0.547
Pm003633 Prunus mume Pm003633 N 0.529
Ciclev10020979m.g Citrus clementina Ciclev10020979m.g I 0.517
PGSC0003DMG400001296 Solanum tuberosum PGSC0003DMG400001296 I 0.500
e2f8 Takifugu rubripes ENSTRUG00000015792 I 0.490
Pavir.Ab02967 Panicum virgatum Pavir.Ab02967 N 0.484
tetur01g05310 Tetranychus urticae tetur01g05310 I 0.469
NEMVEDRAFT_v1g222302 Nematostella vectensis NEMVEDRAFT_v1g222302 N 0.469
Cagra.1390s0037 Capsella grandiflora Cagra.1390s0037 I 0.466
ML000126a Mnemiopsis leidyi ML000126a I 0.462
Lus10033151.g Linum usitatissimum Lus10033151.g I 0.462
Tal_R001534 Tyto alba Tal_R001534 I 0.459
ENSAPLG00000005664 Anas platyrhynchos ENSAPLG00000005664 I 0.459
Afo_R001855 Aptenodytes forsteri Afo_R001855 I 0.459
Aan_R013725 Calypte anna Aan_R013725 I 0.459
ISCW000457 Ixodes scapularis ISCW000457 I 0.459
ENSSHAG00000011293 Sarcophilus harrisii ENSSHAG00000011293 I 0.459
ENSMEUG00000012534 Macropus eugenii ENSMEUG00000012534 I 0.459
E2F5 Meleagris gallopavo ENSMGAG00000011709 I 0.459
ENSPMAG00000000488 Petromyzon marinus ENSPMAG00000000488 I 0.459
POPTR_0006s22150 Populus trichocarpa POPTR_0006s22150 I 0.453
ENSNLEG00000002804 Nomascus leucogenys ENSNLEG00000002804 I 0.453
ATE2F2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003009 I 0.453
Bostr.15654s0048 Boechera stricta Bostr.15654s0048 I 0.453
30170.m014171 Ricinus communis 30170.m014171 I 0.453
Carubv10009432m.g Capsella rubella Carubv10009432m.g I 0.453
SapurV1A.0510s0180 Salix purpurea SapurV1A.0510s0180 I 0.453
GLYMA04G02720 Glycine max GLYMA04G02720 I 0.453
Cagra.1843s0001 Capsella grandiflora Cagra.1843s0001 I 0.453
Aqu1.225581 Amphimedon queenslandica Aqu1.225581 I 0.453
tetur03g04940 Tetranychus urticae tetur03g04940 I 0.446
SMU15000713 Schmidtea mediterranea SMU15000713 I 0.446
tetur03g04810 Tetranychus urticae tetur03g04810 I 0.446
SapurV1A.1444s0050 Salix purpurea SapurV1A.1444s0050 I 0.446
SapurV1A.1401s0050 Salix purpurea SapurV1A.1401s0050 I 0.446
E2FC Arabidopsis thaliana AT1G47870 D 0.446
MDOA005480 Musca domestica MDOA005480 I 0.444
LCUP006273 Lucilia cuprina LCUP006273 I 0.444
e2f5 Tetraodon nigroviridis ENSTNIG00000002195 I 0.439
MCINX013437 Melitaea cinxia MCINX013437 I 0.438
e2f4 Tetraodon nigroviridis ENSTNIG00000005170 I 0.438
e2f5 Takifugu rubripes ENSTRUG00000002354 I 0.438
e2f4 Tetraodon nigroviridis ENSTNIG00000008814 I 0.438
e2f4 Takifugu rubripes ENSTRUG00000009757 I 0.438
HMEL002387 Heliconius melpomene HMEL002387 I 0.438
BGLB004502 Biomphalaria glabrata BGLB004502 I 0.438
HelroG191241 Helobdella robusta HelroG191241 I 0.438
ENSXMAG00000001974 Xiphophorus maculatus ENSXMAG00000001974 I 0.438
KGM_13816 Danaus plexippus KGM_13816 I 0.438
XP_002154174.1 Hydra magnipapillata XP_002154174.1 I 0.438
ENSTSYG00000007645 Tarsius syrichta ENSTSYG00000007645 I 0.438
e_gw1.2.455.1 Phytophthora capsici e_gw1.2.455.1 I 0.438
TriadG50818 Trichoplax adhaerens TriadG50818 I 0.438
Ocbimv22032616m.g Octopus bimaculoides Ocbimv22032616m.g I 0.438
Ocbimv22032617m.g Octopus bimaculoides Ocbimv22032617m.g I 0.438
HHAL003001-PA Halyomorpha halys HHAL003001-PA I 0.438
Pvit_14741 Pogona vitticeps Pvit_14741 I 0.438
Pvit_02135 Pogona vitticeps Pvit_02135 I 0.438
Sakowv30012530m.g Saccoglossus kowalevskii Sakowv30012530m.g I 0.438
Lus10016972.g Linum usitatissimum Lus10016972.g I 0.438
Pavir.J29330 Panicum virgatum Pavir.J29330 I 0.438
Pavir.Ga01887 Panicum virgatum Pavir.Ga01887 I 0.438
MDP0000268258 Malus domestica MDP0000268258 I 0.438
MDP0000250386 Malus domestica MDP0000250386 I 0.438
Pm006225 Prunus mume Pm006225 I 0.438
Myotis_brandtii_E2f4_10015050 Myotis brandtii Myotis_brandtii_E2f4_10015050 I 0.438
SINV22036 Solenopsis invicta SINV22036 I 0.438
e2f4.S Xenopus laevis XB-GENE-482725 I 0.438
ATE2F2 Populus trichocarpa POPTR_0002s02500 I 0.438
NV25797 Nasonia vitripennis NV25797 I 0.438
e2f4 Xenopus tropicalis XB-GENE-482721 I 0.438
E2F4 Taeniopygia guttata ENSTGUG00000005417 I 0.438
ENSP00000368686-D1 Bos grunniens ENSP00000368686-D1 I 0.438
ENSMMUP00000026667 Macaca fascicularis ENSMMUP00000026667 I 0.438
PK10965.1 Cannabis sativa PK10965.1 I 0.438
TTHERM_01099150 Tetrahymena thermophila TTHERM_01099150 I 0.438
NEMVEDRAFT_v1g235633 Nematostella vectensis NEMVEDRAFT_v1g235633 I 0.438
ASIM_0000394401 Anisakis simplex ASIM_0000394401 I 0.438
ENSFALG00000007077 Ficedula albicollis ENSFALG00000007077 I 0.438
E2F4 Felis catus ENSFCAG00000009268 I 0.438
E2F4 Homo sapiens ENSG00000205250 D 0.438
E2F4 Equus caballus ENSECAG00000015595 I 0.438
ENSDORG00000015131 Dipodomys ordii ENSDORG00000015131 I 0.438
e2f4 Danio rerio ENSDARG00000101578 I 0.438
SSLN_0001335001 Schistocephalus solidus SSLN_0001335001 I 0.438
E2F4 Dasypus novemcinctus ENSDNOG00000041139 I 0.438
e2f4 Gasterosteus aculeatus ENSGACG00000013827 I 0.438
E2F4 Gallus gallus ENSGALG00000001722 I 0.438
nAv.1.0.1.g08239 Acanthocheilonema viteae nAv.1.0.1.g08239 I 0.438
HNAJ_0000082301 Hymenolepis nana HNAJ_0000082301 I 0.438
E2F4 Meleagris gallopavo ENSMGAG00000002517 I 0.438
ENSSTOG00000016434 Ictidomys tridecemlineatus ENSSTOG00000016434 I 0.438
ENSGMOG00000012711 Gadus morhua ENSGMOG00000012711 I 0.438
nRc.2.0.1.g30898 Romanomermis culicivorax nRc.2.0.1.g30898 I 0.438
E2F4 Gorilla gorilla ENSGGOG00000011924 I 0.438
e2f5 Danio rerio ENSDARG00000038812 I 0.438
TASK_0000557201 Taenia asiatica TASK_0000557201 I 0.438
TsM_000874400 Taenia solium TsM_000874400 I 0.438
TCNE_0000648301 Toxocara canis TCNE_0000648301 I 0.438
EFV59050 Trichinella spiralis EFV59050 I 0.438
Bra002398 Brassica rapa Bra002398 I 0.438
Bo9g106030 Brassica oleracea Bo9g106030 I 0.438
ACEP12483 Atta cephalotes ACEP12483 I 0.438
BGIBMGA006899 Bombyx mori BGIBMGA006899 I 0.438
TTAC_0000774301 Hydatigera taeniaeformis TTAC_0000774301 I 0.438
E2F4 Anolis carolinensis ENSACAG00000028484 I 0.438
ENSAMEG00000017275 Ailuropoda melanoleuca ENSAMEG00000017275 I 0.438
ENSCJAG00000023311 Callithrix jacchus ENSCJAG00000023311 I 0.438
E2F4 Cavia porcellus ENSCPOG00000010845 I 0.438
ENSCSAG00000003814 Chlorocebus sabaeus ENSCSAG00000003814 I 0.438
E2F4 Callithrix jacchus ENSCJAG00000016403 I 0.438
e2f4/5 Ciona intestinalis ENSCING00000024912 I 0.438
E2F4 Bos taurus ENSBTAG00000012063 I 0.438
E2F4 Canis familiaris ENSCAFG00000020375 I 0.438
HmN_000089900 Hymenolepis microstoma HmN_000089900 I 0.438
nLs.2.1.2.g07942 Litomosoides sigmodontis nLs.2.1.2.g07942 I 0.438
E2F4 Procavia capensis ENSPCAG00000013266 I 0.438
ENSPFOG00000006707 Poecilia formosa ENSPFOG00000006707 I 0.438
ENSPMAG00000000860 Petromyzon marinus ENSPMAG00000000860 I 0.438
ENSPANG00000016794 Papio anubis ENSPANG00000016794 I 0.438
E2F4 Myotis lucifugus ENSMLUG00000023162 I 0.438
D917_10139 Trichinella nativa D917_10139 I 0.438
E2F4 Ochotona princeps ENSOPRG00000015165 I 0.438
ENSPPYG00000007445 Pongo abelii ENSPPYG00000007445 I 0.438
ASU_07245 Ascaris suum ASU_07245 I 0.438
E2f4 Rattus norvegicus ENSRNOG00000015708 I 0.438
E2F4 Sus scrofa ENSSSCG00000002787 I 0.438
SapurV1A.0025s0470 Salix purpurea SapurV1A.0025s0470 I 0.438
E2f5 Rattus norvegicus ENSRNOG00000010760 I 0.438
E2F5 Pteropus vampyrus ENSPVAG00000013659 I 0.438
E2F4 Pan troglodytes ENSPTRG00000031180 I 0.438
E2F4 Pteropus vampyrus ENSPVAG00000005274 I 0.438
ENSONIG00000010271 Oreochromis niloticus ENSONIG00000010271 I 0.438
e2f4 Oryzias latipes ENSORLG00000015705 I 0.438
EmuJ_000535700 Echinococcus multilocularis EmuJ_000535700 I 0.438
E2F4 Macaca mulatta ENSMMUG00000020258 I 0.438
E2f4 Mus musculus ENSMUSG00000014859 D 0.438
ENSNLEG00000004342 Nomascus leucogenys ENSNLEG00000004342 I 0.438
HDID_0000938401 Hymenolepis diminuta HDID_0000938401 I 0.438
E2F4 Monodelphis domestica ENSMODG00000006150 I 0.438
E2F4 Otolemur garnettii ENSOGAG00000000010 I 0.438
ECANG7_01951 Echinococcus canadensis ECANG7_01951 I 0.438
ENSMPUG00000005564 Mustela putorius furo ENSMPUG00000005564 I 0.438
E2F5 Bos taurus ENSBTAG00000009378 I 0.436
E2F5 Callithrix jacchus ENSCJAG00000000387 I 0.436
E2F5 Canis familiaris ENSCAFG00000008628 I 0.436
ENSMMUP00000008413 Macaca fascicularis ENSMMUP00000008413 I 0.436
ENSSTOG00000013339 Ictidomys tridecemlineatus ENSSTOG00000013339 I 0.436
OBART04G12180 Oryza barthii OBART04G12180 I 0.436
ENSSHAG00000011240 Sarcophilus harrisii ENSSHAG00000011240 I 0.436
augustus_masked-nMf.1.1.scaf26567-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf26567-processed-gene-0.0 I 0.432
augustus_masked-nMf.1.1.scaf34489-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf34489-processed-gene-0.0 I 0.432
A_00357 Schistosoma haematobium A_00357 I 0.431
e2f5 Xenopus tropicalis XB-GENE-481326 I 0.431
ECPE_0001328101 Echinostoma caproni ECPE_0001328101 I 0.431
OFLC_0000044701 Onchocerca flexuosa OFLC_0000044701 I 0.431
SCUD_0001228801 Schistosoma curassoni SCUD_0001228801 I 0.431
DME_0000040101 Dracunculus medinensis DME_0000040101 I 0.431
BTMF_0000949601 Brugia timori BTMF_0000949601 I 0.431
T265_09252 Opisthorchis viverrini T265_09252 I 0.431
Sjc_0105380 Schistosoma japonicum Sjc_0105380 I 0.431
nOo.2.0.1.g03631 Onchocerca ochengi nOo.2.0.1.g03631 I 0.431
SROB_0001283101 Schistosoma rodhaini SROB_0001283101 I 0.431
TCLT_0000777801 Thelazia callipaeda TCLT_0000777801 I 0.431
LotgiG127203 Lottia gigantea LotgiG127203 I 0.431
E2F5 Macaca mulatta ENSMMUG00000006380 I 0.431
ENSLOCG00000006277 Lepisosteus oculatus ENSLOCG00000006277 I 0.431
E2F5 Loxodonta africana ENSLAFG00000006007 I 0.431
ENSLACG00000004024 Latimeria chalumnae ENSLACG00000004024 I 0.431
E2F5 Monodelphis domestica ENSMODG00000005958 I 0.431
E2f5 Mus musculus ENSMUSG00000027552 D 0.431
E2F5 Ochotona princeps ENSOPRG00000013545 I 0.431
E2F5 Otolemur garnettii ENSOGAG00000013117 I 0.431
E2F5 Oryctolagus cuniculus ENSOCUG00000012890 I 0.431
E2F5 Gorilla gorilla ENSGGOG00000009737 I 0.431
ENSGALG00000015818 Gallus gallus ENSGALG00000015818 I 0.431
ENSAMEG00000002392 Ailuropoda melanoleuca ENSAMEG00000002392 I 0.431
DAPPUDRAFT_303685 Daphnia pulex DAPPUDRAFT_303685 I 0.431
CapteG1695 Capitella teleta CapteG1695 I 0.431
Bm7213 Brugia malayi Bm7213 I 0.431
ENSCSAG00000013198 Chlorocebus sabaeus ENSCSAG00000013198 I 0.431
ENSCSAVG00000000261 Ciona savignyi ENSCSAVG00000000261 I 0.431
E2F5 Homo sapiens ENSG00000133740 D 0.431
E2F5 Felis catus ENSFCAG00000018498 I 0.431
E2F5 Dasypus novemcinctus ENSDNOG00000009802 I 0.431
mgf019070m Mimulus guttatus mgf019070m I 0.431
ENSPANG00000014637 Papio anubis ENSPANG00000014637 I 0.431
Ca_04894 Cicer arietinum Ca_04894 I 0.431
WBGene00243491 Onchocerca volvulus WBGene00243491 I 0.431
TCM_046885 Theobroma cacao TCM_046885 I 0.431
SPU_028827 Strongylocentrotus purpuratus SPU_028827 I 0.431
Cflo_07334--XP_624285.1_APIME Camponotus floridanus Cflo_07334--XP_624285.1_APIME I 0.431
Hsal_12430--XP_624285.1_APIME Harpegnathos saltator Hsal_12430--XP_624285.1_APIME I 0.431
fgenesh2_pm.scaffold_6000024 Branchiostoma floridae fgenesh2_pm.scaffold_6000024 I 0.431
fgenesh2_pg.scaffold_349000085 Branchiostoma floridae fgenesh2_pg.scaffold_349000085 I 0.431
cassava4389.m1 Manihot esculenta cassava4389.m1 I 0.431
Smp_093310 Schistosoma mansoni Smp_093310 I 0.431
PRUPE_ppa024272mg Prunus persica PRUPE_ppa024272mg I 0.431
E2F5 Pan troglodytes ENSPTRG00000020384 I 0.431
GLYMA06G02738 Glycine max GLYMA06G02738 I 0.431
GB53826 Apis mellifera GB53826 I 0.431
ENSPFOG00000022062 Poecilia formosa ENSPFOG00000022062 I 0.431
L798_07726 Zootermopsis nevadensis L798_07726 I 0.431
WUBG_10257 Wuchereria bancrofti WUBG_10257 I 0.431
LOAG_00035 Loa loa LOAG_00035 I 0.431
E2F5 Sus scrofa ENSSSCG00000006145 I 0.431
E2F4 Microcebus murinus ENSMICG00000007744 I 0.429
ENSETEG00000016857 Echinops telfairi ENSETEG00000016857 I 0.429
E2F5 Procavia capensis ENSPCAG00000014594 I 0.429
E2F5 Tursiops truncatus ENSTTRG00000012129 I 0.429