CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ia03883
(
Panicum virgatum
)
FAR1
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03101 (FAR1)
IPR004330
Pavir.Ia03883
T181769_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ia03883.1.p
FAR1
69
162
DFYSTYARNAGFRIRISRYTRSRRDNSIISRRIVCSKEGFHETRACDGLQSDQKQHERAGTRVGCKAMIMIKNFEPGKWIVTKFVKNHNHGPVP
Pavir.Ia03883.1.p
FAR1
206
300
LFYVNYARLNGFRARISRYCRSRRDNSIISRQIVCSKEGFREIRTKKVMTDEGKTKRPRMITRVGCKAMIVVKKMKSGKWMVSKFEKEHNHSLSY
Pavir.Ia03883.2.p
FAR1
69
162
DFYSTYARNAGFRIRISRYTRSRRDNSIISRRIVCSKEGFHETRACDGLQSDQKQHERAGTRVGCKAMIMIKNFEPGKWIVTKFVKNHNHGPVP
Pavir.Ia03883.2.p
FAR1
206
300
LFYVNYARLNGFRARISRYCRSRRDNSIISRQIVCSKEGFREIRTKKVMTDEGKTKRPRMITRVGCKAMIVVKKMKSGKWMVSKFEKEHNHSLSY
Pavir.Ia03883.3.p
FAR1
69
162
DFYSTYARNAGFRIRISRYTRSRRDNSIISRRIVCSKEGFHETRACDGLQSDQKQHERAGTRVGCKAMIMIKNFEPGKWIVTKFVKNHNHGPVP
Pavir.Ia03883.3.p
FAR1
206
300
LFYVNYARLNGFRARISRYCRSRRDNSIISRQIVCSKEGFREIRTKKVMTDEGKTKRPRMITRVGCKAMIVVKKMKSGKWMVSKFEKEHNHSLSY
Pavir.Ia03883.4.p
FAR1
69
162
DFYSTYARNAGFRIRISRYTRSRRDNSIISRRIVCSKEGFHETRACDGLQSDQKQHERAGTRVGCKAMIMIKNFEPGKWIVTKFVKNHNHGPVP
Pavir.Ia03883.4.p
FAR1
206
300
LFYVNYARLNGFRARISRYCRSRRDNSIISRQIVCSKEGFREIRTKKVMTDEGKTKRPRMITRVGCKAMIVVKKMKSGKWMVSKFEKEHNHSLSY
Links
Other
FAR1
family TFs
Other
Panicum virgatum
TFs
20 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Si034492m.g
Setaria italica
Si034492m.g
N
0.967
GRMZM2G001663
Zea mays
GRMZM2G001663
N
0.939
Sb01g040730
Sorghum bicolor
Sb01g040730
N
0.928
Traes_4DL_879C8557D
Triticum aestivum
Traes_4DL_879C8557D
N
0.900
MLOC_51314
Hordeum vulgare
MLOC_51314
N
0.894
Traes_4AS_636DF8B4C
Triticum aestivum
Traes_4AS_636DF8B4C
N
0.894
Traes_4BL_DCD5FA440
Triticum aestivum
Traes_4BL_DCD5FA440
N
0.894
BRADI1G67740
Brachypodium distachyon
BRADI1G67740
N
0.889
OB03G21220
Oryza brachyantha
OB03G21220
N
0.867
OPUNC03G10640
Oryza punctata
OPUNC03G10640
N
0.867
BGIOSGA012253
Oryza indica
BGIOSGA012253
N
0.861
OGLUM03G10940
Oryza glumaepatula
OGLUM03G10940
N
0.861
OLONG_007342
Oryza longistaminata
OLONG_007342
N
0.861
ONIVA03G11650
Oryza nivara
ONIVA03G11650
N
0.861
ORGLA03G0105900
Oryza glaberrima
ORGLA03G0105900
N
0.861
OS03G0255400
Oryza sativa
OS03G0255400
N
0.861
OMERI03G10300
Oryza meridionalis
OMERI03G10300
N
0.856
TRIUR3_23242
Triticum urartu
TRIUR3_23242
N
0.722
F775_07027
Aegilops tauschii
F775_07027
N
0.717