egl-27 (Caenorhabditis elegans)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 WBGene00001194 T195700_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Enables RNA polymerase II-specific DNA-binding transcription factor binding activity; chromatin binding activity; and enzyme binding activity. Involved in several processes, including hemidesmosome assembly; nematode male tail tip morphogenesis; and oviposition. Located in nucleus. Is expressed in several structures, including anal region; epithelial system; gonadal primordium; head; and tail. Human ortholog(s) of this gene implicated in dentatorubral-pallidoluysian atrophy and schizophrenia. Orthologous to several human genes including RERE (arginine-glutamic acid dipeptide repeats). [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
egl-27
M08205_2.00
Caenorhabditis elegans
YTGATAAG

CTTATCAR
ChIP-seq
Contrino et al.(2012)
Mw142
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
C04A2.3a GATA 439 472
C04A2.3b GATA 295 328
C04A2.3d GATA 198 231

Links

Other GATA family TFs
Other Caenorhabditis elegans TFs

4 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CRE26488 Caenorhabditis remanei CRE26488 I 0.987
CJA22427 Caenorhabditis japonica CJA22427 I 0.962
CBN30908 Caenorhabditis brenneri CBN30908 I 0.944