CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra003311
(
Brassica rapa
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
Bra003311
T199971_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra003311.1-P
GRAS
134
505
IIEQLFNAAELIGNNNNNGDHTALAQGILARLNHHLSYSNNNNNNNKNPPFQRAASHITESLLSLINNASPPLISPENLILRIAAYRTFSETSPFLQFVNFTANQSILESCNDELGFDRIHIIDFDVGYGGQWSSLMQELASRRRNRASSLKITVFAPPPSTVSDEFELRFTEENLRSFAGEVKIPFEIELLSLELLLNPAYWPVSLRSSEKEAVAVNLPVNSVVSGYLPLILRFLKQISPNVVVCSDRGCDRNDAPFPNAVIHALQYHTTLLESLDANQGHEDESVERFWVQPSIEKLLMKRHRWIERSPPWRSLFAQCGFSPASLSQTAEAQAECLLQRSLVRGFYVEKRQGSLVMCWQRKELVTVSAWK
Links
Other
GRAS
family TFs
Other
Brassica rapa
TFs
15 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo6g074360
Brassica oleracea
Bo6g074360
N
0.972
Thhalv10001784m.g
Eutrema salsugineum
Thhalv10001784m.g
N
0.895
HAM1
Arabidopsis lyrata
fgenesh2_kg.4__2711__AT2G45160.1
N
0.890
Cagra.0239s0069
Capsella grandiflora
Cagra.0239s0069
N
0.884
Carubv10024743m.g
Capsella rubella
Carubv10024743m.g
N
0.884
Bostr.25993s0258
Boechera stricta
Bostr.25993s0258
N
0.872
SCL27
Arabidopsis thaliana
AT2G45160
N
0.866
Bo3g037600
Brassica oleracea
Bo3g037600
N
0.865
Bra000375
Brassica rapa
Bra000375
N
0.856
Cagra.6011s0009
Capsella grandiflora
Cagra.6011s0009
N
0.716
Bostr.13158s0062
Boechera stricta
Bostr.13158s0062
N
0.715
Carubv10016840m.g
Capsella rubella
Carubv10016840m.g
N
0.713
HAM2
Arabidopsis lyrata
fgenesh2_kg.5__2529__AT3G60630.1
N
0.712
SCL22
Arabidopsis thaliana
AT3G60630
N
0.711
Thhalv10006506m.g
Eutrema salsugineum
Thhalv10006506m.g
N
0.706