CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thhalv10001784m.g
(
Eutrema salsugineum
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Thhalv10001784m.g
T203185_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10001784m
GRAS
270
642
IIEQLFNAAELIGTTGNNNNGDHTVLAQGILARLNHHLNSNNYTNKPPFQRAASHIAEALLSLIHDASPPLITPENLILRIAAYRSFSETSPFLQFVNFTANQSILEACNDELGFERIHIIDFDVGYGGQWSSLMQELASGGGGRRRNRASLKITVFAPPPSTVSDEFELRFTEENLRSFAGEVKIPFEIELLSLELLLNPAYWPISLRSSDKEAIAVNLPIKSVVSGYLPLILRFIKQISPNVVVCSDRGCDRNDAPFPNAVIHALQYHTTLLESLDANQNQDDSSIERFWVQPSIEKLLVKRHRWIERSPPWRSLFTQCGFSPASLSQTAEAQAECLLQRNPVRGFHVEKRQSSLVMCWQRKELVTVSAWK
Links
Other
GRAS
family TFs
Other
Eutrema salsugineum
TFs
15 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cagra.0239s0069
Capsella grandiflora
Cagra.0239s0069
N
0.920
Carubv10024743m.g
Capsella rubella
Carubv10024743m.g
N
0.920
HAM1
Arabidopsis lyrata
fgenesh2_kg.4__2711__AT2G45160.1
N
0.906
Bo6g074360
Brassica oleracea
Bo6g074360
N
0.897
Bra003311
Brassica rapa
Bra003311
N
0.895
Bostr.25993s0258
Boechera stricta
Bostr.25993s0258
N
0.895
SCL27
Arabidopsis thaliana
AT2G45160
N
0.892
Bo3g037600
Brassica oleracea
Bo3g037600
N
0.886
Bra000375
Brassica rapa
Bra000375
N
0.875
SCL22
Arabidopsis thaliana
AT3G60630
N
0.738
HAM2
Arabidopsis lyrata
fgenesh2_kg.5__2529__AT3G60630.1
N
0.732
Bostr.13158s0062
Boechera stricta
Bostr.13158s0062
N
0.732
Cagra.6011s0009
Capsella grandiflora
Cagra.6011s0009
N
0.727
Thhalv10006506m.g
Eutrema salsugineum
Thhalv10006506m.g
N
0.727
Carubv10016840m.g
Capsella rubella
Carubv10016840m.g
N
0.724