CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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HAM3
(
Arabidopsis lyrata
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
fgenesh2_kg.6__3689__AT4G00150.1
T200131_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_kg.6__3689__AT4G00150.1
GRAS
204
553
IAEQLVKAAEVIESDTCLAQGILARLNQQLSSPVGKPLERAAFYFKEALNNLLHNVSQTLNPYSLIFKIAAYKSFSEISPVLQFANFTSNQALLESFHGFHRLHIVDFDIGYGGQWASLMQELVLRDNAAPLSLKITVLASPANHDQLELGFTQDNLKHFASEINISLDIQVLSLDLLGSISWPNSSEKEAVAVNISAASFSHLPLVLRFVKHLSPTIIVCSDRGCERTDLPFPQQVAHSLHSHAALLESLDAVNANLDAMQKIERFLIQPEIEKLVLDRSRSIERPMMTWQTMFLQMGFLPVTHSNFTESQAECLVQRTPVRGFHVEKKHNSLILCWQRTELVGVSAWR
Links
Other
GRAS
family TFs
Other
Arabidopsis lyrata
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SCL6
Arabidopsis thaliana
AT4G00150
N
0.968
Bostr.14547s0023
Boechera stricta
Bostr.14547s0023
N
0.963
Cagra.1261s0006
Capsella grandiflora
Cagra.1261s0006
N
0.945
Carubv10000626m.g
Capsella rubella
Carubv10000626m.g
N
0.934
Thhalv10029148m.g
Eutrema salsugineum
Thhalv10029148m.g
N
0.858
Bo9g001120
Brassica oleracea
Bo9g001120
N
0.819
Bra037319
Brassica rapa
Bra037319
N
0.810