CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10000626m.g
(
Capsella rubella
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Carubv10000626m.g
T202339_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10000626m
GRAS
194
545
ITEQLVKAAEVMESGGDTCLAQGILARLNQQLSSPVGKPLERAAFYFKEALGNLLHNVSQTLNPYSLIFKIAAYKSFSEISPVLQFANFTSNQALLESFHGFHRLHIVDFDIGYGGQWASLMQELVLRDNAAPLSLKITVFDSPASHDQLELGFTQDNLKHFASEINISLDIQVLSLDLLGSISWPSASEKEAVAVNISAASFSHLPLVLRFVKHLSPTIIVCSDRGCERTDLPFPQQLAHSLHSHGALLESLDAVNANLEAMQKIERFLIQPEIEKLVMDRSRPMERPTMTWQAMFLQMGFSAVAHSNFTESQAECLVQRTPVRGFHVEKKHNSLILCWQRTELVGVSAWR
Links
Other
GRAS
family TFs
Other
Capsella rubella
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cagra.1261s0006
Capsella grandiflora
Cagra.1261s0006
N
0.983
Bostr.14547s0023
Boechera stricta
Bostr.14547s0023
N
0.948
SCL6
Arabidopsis thaliana
AT4G00150
N
0.940
HAM3
Arabidopsis lyrata
fgenesh2_kg.6__3689__AT4G00150.1
N
0.934
Thhalv10029148m.g
Eutrema salsugineum
Thhalv10029148m.g
N
0.876
Bo9g001120
Brassica oleracea
Bo9g001120
N
0.819
Bra037319
Brassica rapa
Bra037319
N
0.816