CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PGSC0003DMG400008442
(
Solanum tuberosum
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
PGSC0003DMG400008442
T201114_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400021748
GRAS
170
559
MKELLLACAEAISDVEVTARDAQMNVLGQKVSDADVTARDVLINVLEQKVSVSGEPMQRLSAYMLEGLKARIYSSGSTIYKMLKCKEPTGSELISYMQVLYHICPYYRFAYTSANVVIEEAMRNESRIHIIDFQIAQGSQWVFLMQNLAHWPGGPPSVHITGVDDSQSAHARGGGLHLVGERLAKAAESCGVPFEFHAAAISGCEVQLENLQIRHGEALAVNFPYVLHHMPDESVTTANHRDRLLRLVKSLSPKIVTLVEQESNTNTSAFLPRFRETLDYYTAMFESIDAGRPGDDKQRINAEAHCVARDIVNIIACEGSDRVERHEVFGKWSMRLTMAGFTPCPLSPSVGEAINGVLKEFSPNYRIAENKGALYLGWKNRALATSSAWR
Links
Other
GRAS
family TFs
Other
Solanum tuberosum
TFs
11 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Solyc05g054170.2
Solanum lycopersicum
Solyc05g054170.2
N
0.927
PGSC0003DMG400013356
Solanum tuberosum
PGSC0003DMG400013356
N
0.775
Solyc11g012510.1
Solanum lycopersicum
Solyc11g012510.1
N
0.772
Solyc04g014830.1
Solanum lycopersicum
Solyc04g014830.1
N
0.737
PGSC0003DMG400023556
Solanum tuberosum
PGSC0003DMG400023556
N
0.734
SCL13
Vitis vinifera
VIT_00s0463g00020
N
0.732
mgf007403m
Mimulus guttatus
mgf007403m
N
0.729
SCL13
Arabidopsis lyrata
fgenesh2_kg.7__2586__AT4G17230.1
N
0.721
Pm012494
Prunus mume
Pm012494
N
0.707
PRUPE_ppa003910mg
Prunus persica
PRUPE_ppa003910mg
N
0.705
evm.TU.supercontig_27.254
Carica papaya
evm.TU.supercontig_27.254
N
0.702