CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10017361m.g
(
Capsella rubella
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Carubv10017361m.g
T202362_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10017361m
GRAS
26
406
MEQLLLHCATAIDSNDAALAHQILWVLNNTAPPDGDSTQRLTSAFLRALLSRAVSKNPTLSSAISFLPPADELHRFSVVELAAFVDLTPWHRFGFIAANAAILTAVEGYSTVHIVDLSLTHCMQIPTLIDAMARRLNKPPPLLKLTVVSSSDHFPPFINISYEELGSKLVNFATTRNITMEFTIIPSTYSDGFSSLIQQLRIYPSFNEALVVNCHMMLRYIPEETLTSSSSSLRTVFLKQLRSLNPRIVTLIEEDVDLTSENLVNRLRSAFNYFWIPFDTTDTFMSEQRRWYEAEISWKIENVVAKEGEERVERTETKRRWIERMRDAEFGGVRVNEEAVADVKAMLEEHAVGWGMKKEDDDNSLVLTWKGHSVVFATVWV
Links
Other
GRAS
family TFs
Other
Capsella rubella
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cagra.25155s0006
Capsella grandiflora
Cagra.25155s0006
N
1.000
SCL32
Arabidopsis thaliana
AT3G49950
N
0.959
fgenesh1_pg.C_scaffold_5001499
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_5001499
N
0.932
Bostr.6864s0245
Boechera stricta
Bostr.6864s0245
N
0.930
Thhalv10010981m.g
Eutrema salsugineum
Thhalv10010981m.g
N
0.840
Bra036041
Brassica rapa
Bra036041
N
0.827
Bo8g079250
Brassica oleracea
Bo8g079250
N
0.810
Bo7g063640
Brassica oleracea
Bo7g063640
N
0.705
Cagra.0342s0029
Capsella grandiflora
Cagra.0342s0029
N
0.702
Thhalv10005469m.g
Eutrema salsugineum
Thhalv10005469m.g
N
0.701