CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ciclev10004502m.g
(
Citrus clementina
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Ciclev10004502m.g
T202377_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ciclev10004502m
GRAS
284
659
SKQTVIEAATAVSEGKYDVASEILTRLSQATNSKGNSEQRLMEHMCSALKSRVNPHENPPPVAELFGKEHAESTQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDRVKVEEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIAESMRTRLSSGNRVNPGFTVKEENGGICFGWMGRTLTVVSAWR
Links
Other
GRAS
family TFs
Other
Citrus clementina
TFs
12 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
orange1.1g041667m.g
Citrus sinensis
orange1.1g041667m.g
N
1.000
TCM_015228
Theobroma cacao
TCM_015228
N
0.783
30169.m006225
Ricinus communis
30169.m006225
N
0.762
cassava18974.valid.m1
Manihot esculenta
cassava18974.valid.m1
N
0.751
cassava7265.valid.m1
Manihot esculenta
cassava7265.valid.m1
N
0.740
Gorai.007G012300
Gossypium raimondii
Gorai.007G012300
N
0.740
evm.TU.supercontig_107.91
Carica papaya
evm.TU.supercontig_107.91
N
0.729
Eucgr.A02754
Eucalyptus grandis
Eucgr.A02754
N
0.721
Gorai.006G198300
Gossypium raimondii
Gorai.006G198300
N
0.717
POPTR_0004s07700
Populus trichocarpa
POPTR_0004s07700
N
0.712
Gorai.006G050200
Gossypium raimondii
Gorai.006G050200
N
0.707
gene13212-v1.0-hybrid
Fragaria vesca
gene13212-v1.0-hybrid
N
0.704