CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0004s07700
(
Populus trichocarpa
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
POPTR_0004s07700
T201187_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0004s07700.1
GRAS
263
640
SKQTVIEAASAIYEGKTDVYTEILTRVSLVSSPGGNSEQRLIEYMLMALKSRLNSSENTTSVMELYSKEHVDATQLLYDLSPCFKLGFMAANLAIIDATREQEQEANTSSNGFHVVDFDIGHGGQYKNLLHALSGLQNSKPAIVKITAVAADSNGVEEERLRLVGETLTQLARRVGLNLCFNVVSCKLSELTRESLGCEPDEALAVNFAFKLYRMPDESVSSTENPRDELLRRVKGLAPRVVTVVEQEMNTNTAPFMARVNESCSYYGALFDSIESTVKGDNSERAKVEEGLGRRMVNSVACEGRDRVERCEVFGKWRARMGMAGFELKPLSHNIAESMKTRLSLANRVNPGFSVKEENGGVCFGWMGKTLTVASAWR
Links
Other
GRAS
family TFs
Other
Populus trichocarpa
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SapurV1A.0147s0170
Salix purpurea
SapurV1A.0147s0170
N
0.893
POPTR_0017s01730
Populus trichocarpa
POPTR_0017s01730
N
0.827
SapurV1A.1012s0040
Salix purpurea
SapurV1A.1012s0040
N
0.819
30169.m006225
Ricinus communis
30169.m006225
N
0.762
cassava18974.valid.m1
Manihot esculenta
cassava18974.valid.m1
N
0.742
TCM_015228
Theobroma cacao
TCM_015228
N
0.734
cassava7265.valid.m1
Manihot esculenta
cassava7265.valid.m1
N
0.734
Ciclev10004502m.g
Citrus clementina
Ciclev10004502m.g
N
0.712
orange1.1g041667m.g
Citrus sinensis
orange1.1g041667m.g
N
0.712
Gorai.006G050200
Gossypium raimondii
Gorai.006G050200
N
0.702