CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ciclev10027413m.g
(
Citrus clementina
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Ciclev10027413m.g
T202411_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ciclev10027413m
GRAS
170
540
AEQLLNPCAAAITAGNLTRVQHLLYVLHELASPTGDANHRLAAHGLRALTHHLSSLSSSSTTTTSTGPLTFSSTEPRFFQKSLLNFYDKSPWFAFPNNIANSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNEETPFSVGPPGDNYSLQLLGFAKSMNINLQINRLESHPLQDLSAQMVSTYPEETLIVCTQFRLHHLNHSTPDERTEFLRVLKSLEPKGVILSENNMDCSCGNCGDFATGFARRVEYLWRFLDSTSAALKAGRAKKGGAEMNEGKDKWCDRMRGVGFVGEVFGEDAIDGGRALLRKYDNSWETRVDERDGCIELWWKGQPVSFCSLWK
Links
Other
GRAS
family TFs
Other
Citrus clementina
TFs
15 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
orange1.1g008559m.g
Citrus sinensis
orange1.1g008559m.g
N
0.904
VIT_09s0002g01190
Vitis vinifera
VIT_09s0002g01190
N
0.769
POPTR_0003s06380
Populus trichocarpa
POPTR_0003s06380
N
0.754
SapurV1A.0002s0940
Salix purpurea
SapurV1A.0002s0940
N
0.751
TCM_029136
Theobroma cacao
TCM_029136
N
0.738
29706.m001281
Ricinus communis
29706.m001281
N
0.737
Gorai.011G058900
Gossypium raimondii
Gorai.011G058900
N
0.737
cassava34800.m1
Manihot esculenta
cassava34800.m1
N
0.734
POPTR_0001s16890
Populus trichocarpa
POPTR_0001s16890
N
0.733
PRUPE_ppa022653mg
Prunus persica
PRUPE_ppa022653mg
N
0.727
MDP0000308434
Malus domestica
MDP0000308434
N
0.726
gene25548-v1.0-hybrid
Fragaria vesca
gene25548-v1.0-hybrid
N
0.723
Pm013263
Prunus mume
Pm013263
N
0.722
cassava2753.m1
Manihot esculenta
cassava2753.m1
N
0.712
MTR_8g020840
Medicago truncatula
MTR_8g020840
N
0.700