CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Pavir.J10950
(
Panicum virgatum
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Pavir.J10950
T203051_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J10950.1.p
GRAS
1
189
METIRAEDLNLDPEEVLIVNCIYQFKNLMDDSVLIESPRDVALNNIRKMRPHAFIHGIVNGSFSAPFFVTRFREALFYYSALFDVLDTTTPRDSNQRMLIEQNIFGRAALNVIACEGTDRVERPETYKQWQVRNQRAGLKQLPLNPNIVQVVRDKVKECYHKDFVIDIDHHWLLQGWKGRILFAISTWV
Links
Other
GRAS
family TFs
Other
Panicum virgatum
TFs
14 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.J28748
Panicum virgatum
Pavir.J28748
N
0.947
GRMZM2G179325
Zea mays
GRMZM2G179325
N
0.894
Sb08g018940
Sorghum bicolor
Sb08g018940
N
0.889
Pavir.J38998
Panicum virgatum
Pavir.J38998
N
0.884
GRMZM2G159475
Zea mays
GRMZM2G159475
N
0.873
BRADI4G03867
Brachypodium distachyon
BRADI4G03867
N
0.862
OMERI12G11530
Oryza meridionalis
OMERI12G11530
N
0.852
OPUNC12G15050
Oryza punctata
OPUNC12G15050
N
0.852
OGLUM12G18120
Oryza glumaepatula
OGLUM12G18120
N
0.847
ORUFI12G18360
Oryza rufipogon
ORUFI12G18360
N
0.847
Traes_5AS_710247B67
Triticum aestivum
Traes_5AS_710247B67
N
0.836
Traes_5BS_ED54C58C5
Triticum aestivum
Traes_5BS_ED54C58C5
N
0.836
Pavir.J08330
Panicum virgatum
Pavir.J08330
N
0.831
MLOC_21297
Hordeum vulgare
MLOC_21297
N
0.815