SELMODRAFT_77000 (Selaginella moellendorffii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 SELMODRAFT_77000 T223135_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.607 0.754
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.607 0.754
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.607 0.754
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.603 0.719
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.603 0.719
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EFJ37565 Homeodomain 4 64

Links

Other Homeodomain family TFs
Other Selaginella moellendorffii TFs

231 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SELMODRAFT_167294 Selaginella moellendorffii SELMODRAFT_167294 I 0.867
mgb000172m Mimulus guttatus mgb000172m N 0.691
OB12G25330 Oryza brachyantha OB12G25330 N 0.639
GSMUA_Achr8G20090_001 Musa acuminata GSMUA_Achr8G20090_001 I 0.638
e_gw1.15.340.1 Physcomitrella patens e_gw1.15.340.1 I 0.611
estExt_gwp_gw1.C_1880070 Physcomitrella patens estExt_gwp_gw1.C_1880070 I 0.611
estExt_gwp_gw1.C_550053 Physcomitrella patens estExt_gwp_gw1.C_550053 I 0.611
estExt_gwp_gw1.C_670048 Physcomitrella patens estExt_gwp_gw1.C_670048 I 0.611
AMTR_s00148p00033940 Amborella trichopoda AMTR_s00148p00033940 I 0.608
GSMUA_Achr2G13050_001 Musa acuminata GSMUA_Achr2G13050_001 I 0.608
GSMUA_Achr8G02960_001 Musa acuminata GSMUA_Achr8G02960_001 I 0.608
SELMODRAFT_146209 Selaginella moellendorffii SELMODRAFT_146209 I 0.608
SELMODRAFT_270225 Selaginella moellendorffii SELMODRAFT_270225 I 0.608
Eucgr.D00184 Eucalyptus grandis Eucgr.D00184 I 0.608
Gorai.011G004200 Gossypium raimondii Gorai.011G004200 I 0.608
AMTR_s00056p00085520 Amborella trichopoda AMTR_s00056p00085520 I 0.607
AMTR_s00155p00069240 Amborella trichopoda AMTR_s00155p00069240 I 0.607
ATHB-9 Arabidopsis thaliana AT1G30490 D 0.607
ATHB-14 Arabidopsis thaliana AT2G34710 I 0.607
HOX32 Oryza indica BGIOSGA013211 I 0.607
HOX33 Oryza indica BGIOSGA035845 I 0.607
Bo4g039380 Brassica oleracea Bo4g039380 I 0.607
Bo4g182800 Brassica oleracea Bo4g182800 I 0.607
Bo5g063050 Brassica oleracea Bo5g063050 I 0.607
Bra005398 Brassica rapa Bra005398 I 0.607
Bra021926 Brassica rapa Bra021926 I 0.607
Bra032394 Brassica rapa Bra032394 I 0.607
ATHB-15 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003335 I 0.607
PHV Arabidopsis lyrata fgenesh2_kg.1__3231__AT1G30490.1 I 0.607
GLYMA04G09000 Glycine max GLYMA04G09000 I 0.607
GLYMA06G09100 Glycine max GLYMA06G09100 I 0.607
GLYMA09G02750 Glycine max GLYMA09G02750 I 0.607
GLYMA11G20520 Glycine max GLYMA11G20520 I 0.607
GLYMA12G08080 Glycine max GLYMA12G08080 I 0.607
GLYMA15G13640 Glycine max GLYMA15G13640 I 0.607
GRMZM2G023291 Zea mays GRMZM2G023291 I 0.607
GSMUA_Achr4G28360_001 Musa acuminata GSMUA_Achr4G28360_001 I 0.607
GSMUA_Achr4G31660_001 Musa acuminata GSMUA_Achr4G31660_001 I 0.607
GSMUA_Achr5G02420_001 Musa acuminata GSMUA_Achr5G02420_001 I 0.607
GSMUA_Achr5G06550_001 Musa acuminata GSMUA_Achr5G06550_001 I 0.607
GSMUA_Achr5G18530_001 Musa acuminata GSMUA_Achr5G18530_001 I 0.607
GSMUA_Achr7G01060_001 Musa acuminata GSMUA_Achr7G01060_001 I 0.607
LPERR12G15670 Leersia perrieri LPERR12G15670 I 0.607
MTR_2g030130 Medicago truncatula MTR_2g030130 I 0.607
MTR_2g094520 Medicago truncatula MTR_2g094520 I 0.607
MTR_4g058970 Medicago truncatula MTR_4g058970 I 0.607
MTR_8g013980 Medicago truncatula MTR_8g013980 I 0.607
OBART03G27200 Oryza barthii OBART03G27200 I 0.607
OBART12G18630 Oryza barthii OBART12G18630 I 0.607
OGLUM03G27880 Oryza glumaepatula OGLUM03G27880 I 0.607
OGLUM12G20280 Oryza glumaepatula OGLUM12G20280 I 0.607
OMERI03G00550 Oryza meridionalis OMERI03G00550 I 0.607
OMERI12G14040 Oryza meridionalis OMERI12G14040 I 0.607
ONIVA03G28370 Oryza nivara ONIVA03G28370 I 0.607
ONIVA12G17580 Oryza nivara ONIVA12G17580 I 0.607
OPUNC03G24840 Oryza punctata OPUNC03G24840 I 0.607
OPUNC12G16840 Oryza punctata OPUNC12G16840 I 0.607
ORGLA03G0253300 Oryza glaberrima ORGLA03G0253300 I 0.607
ORGLA12G0158900 Oryza glaberrima ORGLA12G0158900 I 0.607
ORUFI03G28280 Oryza rufipogon ORUFI03G28280 I 0.607
ORUFI12G20830 Oryza rufipogon ORUFI12G20830 I 0.607
HOX32 Oryza sativa OS03G0640800 I 0.607
HOX33 Oryza sativa OS12G0612700 I 0.607
PGSC0003DMG400011810 Solanum tuberosum PGSC0003DMG400011810 I 0.607
PGSC0003DMG400021125 Solanum tuberosum PGSC0003DMG400021125 I 0.607
PGSC0003DMG401008054 Solanum tuberosum PGSC0003DMG401008054 I 0.607
POPTR_0001s38120 Populus trichocarpa POPTR_0001s38120 I 0.607
POPTR_0004s22090 Populus trichocarpa POPTR_0004s22090 I 0.607
POPTR_0009s01990 Populus trichocarpa POPTR_0009s01990 I 0.607
POPTR_0011s10070 Populus trichocarpa POPTR_0011s10070 I 0.607
PRUPE_ppa001343mg Prunus persica PRUPE_ppa001343mg I 0.607
PRUPE_ppa001378mg Prunus persica PRUPE_ppa001378mg I 0.607
PRUPE_ppa001386mg Prunus persica PRUPE_ppa001386mg I 0.607
PRUPE_ppa001405mg Prunus persica PRUPE_ppa001405mg I 0.607
Sb01g013710 Sorghum bicolor Sb01g013710 I 0.607
PHB Arabidopsis lyrata scaffold_402060.1 I 0.607
Si034228m.g Setaria italica Si034228m.g I 0.607
Solyc02g024070.2 Solanum lycopersicum Solyc02g024070.2 I 0.607
Solyc02g069830.2 Solanum lycopersicum Solyc02g069830.2 I 0.607
Solyc08g066500.2 Solanum lycopersicum Solyc08g066500.2 I 0.607
Solyc11g069470.1 Solanum lycopersicum Solyc11g069470.1 I 0.607
TCM_026907 Theobroma cacao TCM_026907 I 0.607
TCM_028866 Theobroma cacao TCM_028866 I 0.607
TCM_042062 Theobroma cacao TCM_042062 I 0.607
REV Vitis vinifera VIT_06s0004g02800 I 0.607
ATHB-15 Vitis vinifera VIT_09s0002g03740 I 0.607
VIT_10s0003g04670 Vitis vinifera VIT_10s0003g04670 I 0.607
Ca_02539 Cicer arietinum Ca_02539 I 0.607
Ca_07994 Cicer arietinum Ca_07994 I 0.607
Ca_08667 Cicer arietinum Ca_08667 I 0.607
Ca_14560 Cicer arietinum Ca_14560 I 0.607
Cla000910 Citrullus lanatus Cla000910 I 0.607
Cla008886 Citrullus lanatus Cla008886 I 0.607
Cla009989 Citrullus lanatus Cla009989 I 0.607
Cla023460 Citrullus lanatus Cla023460 I 0.607
Pm001037 Prunus mume Pm001037 I 0.607
Pm005163 Prunus mume Pm005163 I 0.607
Pm010515 Prunus mume Pm010515 I 0.607
Pm013438 Prunus mume Pm013438 I 0.607
27538.m000332 Ricinus communis 27538.m000332 I 0.607
29794.m003393 Ricinus communis 29794.m003393 I 0.607
30075.m001183 Ricinus communis 30075.m001183 I 0.607
cassava24160.valid.m1 Manihot esculenta cassava24160.valid.m1 I 0.607
cassava24280.valid.m1 Manihot esculenta cassava24280.valid.m1 I 0.607
cassava24281.valid.m1 Manihot esculenta cassava24281.valid.m1 I 0.607
cassava24282.valid.m1 Manihot esculenta cassava24282.valid.m1 I 0.607
cassava31872.valid.m1 Manihot esculenta cassava31872.valid.m1 I 0.607
cassava849.valid.m1 Manihot esculenta cassava849.valid.m1 I 0.607
Cucsa.048220 Cucumis sativus Cucsa.048220 I 0.607
Cucsa.312510 Cucumis sativus Cucsa.312510 I 0.607
Cucsa.361130 Cucumis sativus Cucsa.361130 I 0.607
estExt_gwp_gw1.C_700130 Physcomitrella patens estExt_gwp_gw1.C_700130 I 0.607
mgf008512m Mimulus guttatus mgf008512m I 0.607
Aquca_001_00306 Aquilegia coerulea Aquca_001_00306 I 0.607
Aquca_026_00358 Aquilegia coerulea Aquca_026_00358 I 0.607
Aquca_030_00162 Aquilegia coerulea Aquca_030_00162 I 0.607
Bostr.0124s0004 Boechera stricta Bostr.0124s0004 I 0.607
Bostr.15697s0347 Boechera stricta Bostr.15697s0347 I 0.607
Bostr.23794s0635 Boechera stricta Bostr.23794s0635 I 0.607
Cagra.1508s0156 Capsella grandiflora Cagra.1508s0156 I 0.607
Cagra.3346s0023 Capsella grandiflora Cagra.3346s0023 I 0.607
Cagra.4122s0002 Capsella grandiflora Cagra.4122s0002 I 0.607
Carubv10008304m.g Capsella rubella Carubv10008304m.g I 0.607
Carubv10012162m.g Capsella rubella Carubv10012162m.g I 0.607
Carubv10022629m.g Capsella rubella Carubv10022629m.g I 0.607
Ciclev10007435m.g Citrus clementina Ciclev10007435m.g I 0.607
Ciclev10014266m.g Citrus clementina Ciclev10014266m.g I 0.607
Ciclev10024891m.g Citrus clementina Ciclev10024891m.g I 0.607
Eucgr.B02504 Eucalyptus grandis Eucgr.B02504 I 0.607
Eucgr.C00605 Eucalyptus grandis Eucgr.C00605 I 0.607
Eucgr.F03066 Eucalyptus grandis Eucgr.F03066 I 0.607
evm.TU.supercontig_109.22 Carica papaya evm.TU.supercontig_109.22 I 0.607
evm.TU.supercontig_545.3 Carica papaya evm.TU.supercontig_545.3 I 0.607
gene08999-v1.0-hybrid Fragaria vesca gene08999-v1.0-hybrid I 0.607
gene25646-v1.0-hybrid Fragaria vesca gene25646-v1.0-hybrid I 0.607
gene28942-v1.0-hybrid Fragaria vesca gene28942-v1.0-hybrid I 0.607
Gorai.001G026800 Gossypium raimondii Gorai.001G026800 I 0.607
Gorai.003G142200 Gossypium raimondii Gorai.003G142200 I 0.607
Gorai.009G049100 Gossypium raimondii Gorai.009G049100 I 0.607
Gorai.009G107500 Gossypium raimondii Gorai.009G107500 I 0.607
Gorai.009G136800 Gossypium raimondii Gorai.009G136800 I 0.607
Gorai.010G105900 Gossypium raimondii Gorai.010G105900 I 0.607
Gorai.013G266900 Gossypium raimondii Gorai.013G266900 I 0.607
Lus10000719.g Linum usitatissimum Lus10000719.g I 0.607
Lus10021470.g Linum usitatissimum Lus10021470.g I 0.607
Lus10023357.g Linum usitatissimum Lus10023357.g I 0.607
Lus10038449.g Linum usitatissimum Lus10038449.g I 0.607
MDP0000005879 Malus domestica MDP0000005879 I 0.607
MDP0000050082 Malus domestica MDP0000050082 I 0.607
MDP0000126553 Malus domestica MDP0000126553 I 0.607
MDP0000236500 Malus domestica MDP0000236500 I 0.607
MDP0000242861 Malus domestica MDP0000242861 I 0.607
MDP0000426630 Malus domestica MDP0000426630 I 0.607
MDP0000943529 Malus domestica MDP0000943529 I 0.607
orange1.1g003069m.g Citrus sinensis orange1.1g003069m.g I 0.607
orange1.1g003071m.g Citrus sinensis orange1.1g003071m.g I 0.607
orange1.1g003250m.g Citrus sinensis orange1.1g003250m.g I 0.607
orange1.1g048771m.g Citrus sinensis orange1.1g048771m.g I 0.607
Pavir.Ia01087 Panicum virgatum Pavir.Ia01087 I 0.607
Pavir.Ib04083 Panicum virgatum Pavir.Ib04083 I 0.607
SapurV1A.0049s0450 Salix purpurea SapurV1A.0049s0450 I 0.607
SapurV1A.0083s0250 Salix purpurea SapurV1A.0083s0250 I 0.607
SapurV1A.0563s0010 Salix purpurea SapurV1A.0563s0010 I 0.607
Thhalv10006792m.g Eutrema salsugineum Thhalv10006792m.g I 0.607
Thhalv10016241m.g Eutrema salsugineum Thhalv10016241m.g I 0.607
PK07866.1 Cannabis sativa PK07866.1 I 0.607
PK08284.1 Cannabis sativa PK08284.1 I 0.607
LjSGA_014333.2 Lotus japonicus LjSGA_014333.2 I 0.607
BRADI1G13910 Brachypodium distachyon BRADI1G13910 I 0.605
F775_09568 Aegilops tauschii F775_09568 I 0.605
MTR_3g109800 Medicago truncatula MTR_3g109800 I 0.605
PGSC0003DMG400026460 Solanum tuberosum PGSC0003DMG400026460 I 0.605
PGSC0003DMG401029143 Solanum tuberosum PGSC0003DMG401029143 I 0.605
PGSC0003DMG402029143 Solanum tuberosum PGSC0003DMG402029143 I 0.605
POPTR_0006s25390 Populus trichocarpa POPTR_0006s25390 I 0.605
POPTR_0018s08110 Populus trichocarpa POPTR_0018s08110 I 0.605
Solyc12g044410.1 Solanum lycopersicum Solyc12g044410.1 I 0.605
TCM_037207 Theobroma cacao TCM_037207 I 0.605
Traes_5DL_8F7AC72B0 Triticum aestivum Traes_5DL_8F7AC72B0 I 0.605
TRIUR3_06898 Triticum urartu TRIUR3_06898 I 0.605
Cla019819 Citrullus lanatus Cla019819 I 0.605
cassava5988.valid.m1 Manihot esculenta cassava5988.valid.m1 I 0.605
Cucsa.167110 Cucumis sativus Cucsa.167110 I 0.605
mgf002274m Mimulus guttatus mgf002274m I 0.605
mgf004678m Mimulus guttatus mgf004678m I 0.605
SapurV1A.0216s0190 Salix purpurea SapurV1A.0216s0190 I 0.605
SapurV1A.0272s0190 Salix purpurea SapurV1A.0272s0190 I 0.605
LjSGA_068629.1 Lotus japonicus LjSGA_068629.1 I 0.605
ATHB-15 Arabidopsis thaliana AT1G52150 D 0.603
ATHB-8 Arabidopsis thaliana AT4G32880 I 0.603
Bo1g009850 Brassica oleracea Bo1g009850 I 0.603
Bo3g171030 Brassica oleracea Bo3g171030 I 0.603
Bo3g181130 Brassica oleracea Bo3g181130 I 0.603
Bo6g027650 Brassica oleracea Bo6g027650 I 0.603
Bra011392 Brassica rapa Bra011392 I 0.603
Bra014315 Brassica rapa Bra014315 I 0.603
Bra018948 Brassica rapa Bra018948 I 0.603
Bra034539 Brassica rapa Bra034539 I 0.603
ATHB-8 Arabidopsis lyrata fgenesh2_kg.7__841__AT4G32880.1 I 0.603
GLYMA07G01940 Glycine max GLYMA07G01940 I 0.603
GLYMA07G01950 Glycine max GLYMA07G01950 I 0.603
GLYMA08G21610 Glycine max GLYMA08G21610 I 0.603
PGSC0003DMG400002616 Solanum tuberosum PGSC0003DMG400002616 I 0.603
POPTR_0001s18930 Populus trichocarpa POPTR_0001s18930 I 0.603
POPTR_0003s04860 Populus trichocarpa POPTR_0003s04860 I 0.603
Solyc03g120910.2 Solanum lycopersicum Solyc03g120910.2 I 0.603
ATHB-8 Vitis vinifera VIT_04s0008g03250 I 0.603
Ca_23324 Cicer arietinum Ca_23324 I 0.603
cassava1072.valid.m1 Manihot esculenta cassava1072.valid.m1 I 0.603
mgf009674m Mimulus guttatus mgf009674m I 0.603
mgf015617m Mimulus guttatus mgf015617m I 0.603
Bostr.7867s1139 Boechera stricta Bostr.7867s1139 I 0.603
Cagra.4093s0017 Capsella grandiflora Cagra.4093s0017 I 0.603
Carubv10004127m.g Capsella rubella Carubv10004127m.g I 0.603
MDP0000313059 Malus domestica MDP0000313059 I 0.603
SapurV1A.0002s0010 Salix purpurea SapurV1A.0002s0010 I 0.603
SapurV1A.0370s0160 Salix purpurea SapurV1A.0370s0160 I 0.603
SapurV1A.0805s0030 Salix purpurea SapurV1A.0805s0030 I 0.603
Thhalv10011238m.g Eutrema salsugineum Thhalv10011238m.g I 0.603
Thhalv10024403m.g Eutrema salsugineum Thhalv10024403m.g I 0.603
PK01613.1 Cannabis sativa PK01613.1 I 0.603
PK07568.1 Cannabis sativa PK07568.1 I 0.603
PDK_20s1819641g001 Phoenix dactylifera PDK_20s1819641g001 I 0.603
30146.m003520 Ricinus communis 30146.m003520 I 0.602
cassava31462.valid.m1 Manihot esculenta cassava31462.valid.m1 I 0.602
GLYMA08G21620 Glycine max GLYMA08G21620 I 0.601
MTR_2g101190 Medicago truncatula MTR_2g101190 I 0.601
Ca_02790 Cicer arietinum Ca_02790 I 0.601
mgf006264m Mimulus guttatus mgf006264m I 0.601
MDP0000251484 Malus domestica MDP0000251484 I 0.601
SapurV1A.0950s0040 Salix purpurea SapurV1A.0950s0040 I 0.601