CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh2_kg.scaffold_131000004
(
Branchiostoma floridae
)
Homeodomain,Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
fgenesh2_kg.scaffold_131000004
T237730_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PAX2
M03294_2.00
Homo sapiens
SGTCACGCWTSRNTGVNY
RNBCANYSAWGCGTGACS
SELEX
Jolma et al.(2013)
PAX2_1
0.772
0.772
PAX2
M05428_2.00
Homo sapiens
NSGYYACGCNYSRNYRVNBN
NVNBYRNYSRNGCGTRRCSN
SELEX
Yin et al.(2017)
PAX2_eDBD_HT-SELEX
0.772
0.772
PAX2
M10808_2.00
Homo sapiens
NNHNRTYAHKBRHDMBBNN
NNVVKHDYVMDWRAYNDNN
Transfac
Matys et al.(2006)
V$PAX2_01
0.772
0.772
PAX2
M10809_2.00
Homo sapiens
NDSTTTNNN
NNNAAASHN
Transfac
Matys et al.(2006)
V$PAX2_02
0.772
0.772
PAX2
M10810_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX2_Q2
0.772
0.772
PAX2
M05429_2.00
Homo sapiens
NSGTCACGCWTSANYGVNYN
NRNBCRNTSAWGCGTGACSN
SELEX
Yin et al.(2017)
PAX2_eDBD_Methyl-HT-SELEX
0.772
0.772
Pax2
M02690_2.00
Mus musculus
NRTCAYKB
VMRTGAYN
SELEX
Mathelier et al.(2014)
MA0067.1
0.766
0.766
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_kg.scaffold_131000004
Paired box
22
146
GHGGVNQLGGVYVNGRPLPDVVRHRIVELAHQGVRPCDISRQLRVSHGCVSKILRRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRMTR
fgenesh2_kg.scaffold_131000004
Homeodomain
248
294
EQKRSTFTPDQLEALEQAFNRGHYPTDPFNRDNMSNKVDLSQTRVQD
Links
Other
Homeodomain,Paired box
family TFs
Other
Branchiostoma floridae
TFs
46 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PAX2
Monodelphis domestica
ENSMODG00000019353
I
0.846
ENSAMEG00000017523
Ailuropoda melanoleuca
ENSAMEG00000017523
I
0.846
Pax2
Mus musculus
ENSMUSG00000004231
D
0.846
PAX2
Macaca mulatta
ENSMMUG00000009163
I
0.846
PAX2
Sus scrofa
ENSSSCG00000010556
I
0.846
ENSMEUG00000013247
Macropus eugenii
ENSMEUG00000013247
I
0.846
PAX2
Microcebus murinus
ENSMICG00000001357
I
0.846
PAX2
Oryctolagus cuniculus
ENSOCUG00000012860
I
0.846
PAX2
Otolemur garnettii
ENSOGAG00000015274
I
0.846
PAX2
Pan troglodytes
ENSPTRG00000002853
I
0.846
PAX2
Pteropus vampyrus
ENSPVAG00000002148
I
0.846
ENSPPYG00000002572
Pongo abelii
ENSPPYG00000002572
I
0.846
PAX2
Procavia capensis
ENSPCAG00000006623
I
0.846
PAX2
Ochotona princeps
ENSOPRG00000007096
I
0.846
ENSPANG00000021132
Papio anubis
ENSPANG00000021132
I
0.846
PAX2
Tursiops truncatus
ENSTTRG00000015106
I
0.846
PAX2
Loxodonta africana
ENSLAFG00000002388
I
0.846
PAX2
Dasypus novemcinctus
ENSDNOG00000013328
I
0.846
Myotis_brandtii_PAX2_10025650
Myotis brandtii
Myotis_brandtii_PAX2_10025650
I
0.846
PAX2
Cavia porcellus
ENSCPOG00000000939
I
0.846
PAX2
Callithrix jacchus
ENSCJAG00000017397
I
0.846
PAX2
Bos taurus
ENSBTAG00000021566
I
0.846
PAX2
Canis familiaris
ENSCAFG00000009709
I
0.846
PAX2
Equus caballus
ENSECAG00000021123
I
0.846
PAX2
Erinaceus europaeus
ENSEEUG00000001995
I
0.846
PAX2
Gorilla gorilla
ENSGGOG00000014908
I
0.846
ENSP00000359319-D1
Bos grunniens
ENSP00000359319-D1
I
0.846
PAX2
Homo sapiens
ENSG00000075891
D
0.846
PAX2
Felis catus
ENSFCAG00000011602
I
0.846
PAX2
Echinops telfairi
ENSETEG00000014765
I
0.846
ENSP00000359319
Macaca fascicularis
ENSP00000359319
I
0.846
ENSSHAG00000014328
Sarcophilus harrisii
ENSSHAG00000014328
I
0.846
ENSMPUG00000016955
Mustela putorius furo
ENSMPUG00000016955
I
0.840
ENSFALG00000007308
Ficedula albicollis
ENSFALG00000007308
I
0.840
Pax2
Rattus norvegicus
ENSRNOG00000014253
I
0.840
CAA71206
Xenopus laevis
CAA71206
I
0.833
pax2.L
Xenopus laevis
XB-GENE-486805
I
0.833
Pax2
Dipodomys ordii
ENSDORG00000006193
I
0.830
Pvit_13858
Pogona vitticeps
Pvit_13858
I
0.814
Gfo_R002455
Geospiza fortis
Gfo_R002455
I
0.772
PAX2
Taeniopygia guttata
ENSTGUG00000007620
I
0.772
PAX2
Myotis lucifugus
ENSMLUG00000015106
I
0.766
ENSLACG00000017470
Latimeria chalumnae
ENSLACG00000017470
I
0.766
ENSLOCG00000012825
Lepisosteus oculatus
ENSLOCG00000012825
I
0.754
CAA04222
Xenopus laevis
CAA04222
I
0.754
Sakowv30045649m.g
Saccoglossus kowalevskii
Sakowv30045649m.g
I
0.731