orange1.1g047530m.g (Citrus sinensis)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 orange1.1g047530m.g T247178_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.702 0.702
gw1.238.28.1
M02262_2.00 		Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN		 PBM
Weirauch et al.(2014)
pTH8459 		0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g047530m LOB 26 72

Links

Other LOB family TFs
Other Citrus sinensis TFs

15 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA12G07650 Glycine max GLYMA12G07650 I 0.936
Solyc04g050010.1 Solanum lycopersicum Solyc04g050010.1 N 0.915
Gorai.012G185900 Gossypium raimondii Gorai.012G185900 N 0.811
cassava16668.m1 Manihot esculenta cassava16668.m1 N 0.809
OMERI05G01740 Oryza meridionalis OMERI05G01740 N 0.804
OPUNC05G01610 Oryza punctata OPUNC05G01610 N 0.804
OBART05G01640 Oryza barthii OBART05G01640 N 0.788
evm.TU.contig_40341.2 Carica papaya evm.TU.contig_40341.2 N 0.761
GSMUA_Achr3G17800_001 Musa acuminata GSMUA_Achr3G17800_001 N 0.745
Cucsa.358620 Cucumis sativus Cucsa.358620 N 0.705
SELMODRAFT_49085 Selaginella moellendorffii SELMODRAFT_49085 I 0.702
mgf018189m Mimulus guttatus mgf018189m I 0.702
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.702
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.702
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.702