Bra021534 (Brassica rapa)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Bra021534 T248025_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASIL2
M06973_2.00 		Arabidopsis thaliana
TCRCCGGARAH
DTYTCCGGYGA		 Dap-seq
OMalley et al.(2016)
At3g14180_col 		0.878 0.769
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra021534.1-P MADF 75 149

Links

Other MADF family TFs
Other Brassica rapa TFs

12 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra021536 Brassica rapa Bra021536 I 0.923
Bostr.28625s0287 Boechera stricta Bostr.28625s0287 I 0.878
Cagra.3631s0005 Capsella grandiflora Cagra.3631s0005 I 0.878
Carubv10015321m.g Capsella rubella Carubv10015321m.g I 0.878
Thhalv10020691m.g Eutrema salsugineum Thhalv10020691m.g I 0.878
ASIL2 Arabidopsis thaliana AT3G14180 D 0.878
fgenesh2_kg.3__1533__AT3G14180.1 Arabidopsis lyrata fgenesh2_kg.3__1533__AT3G14180.1 I 0.878
Bo3g065930 Brassica oleracea Bo3g065930 I 0.878
Bo1g134590 Brassica oleracea Bo1g134590 I 0.862
Carubv10015798m.g Capsella rubella Carubv10015798m.g I 0.828
Cagra.3631s0002 Capsella grandiflora Cagra.3631s0002 I 0.828
GSMUA_Achr6G26840_001 Musa acuminata GSMUA_Achr6G26840_001 I 0.814