Bo3g065930 (Brassica oleracea)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Bo3g065930 T247982_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASIL2
M06973_2.00 		Arabidopsis thaliana
TCRCCGGARAH
DTYTCCGGYGA		 Dap-seq
OMalley et al.(2016)
At3g14180_col 		0.943 0.887
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g065930.1 MADF 98 175

Links

Other MADF family TFs
Other Brassica oleracea TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ASIL2 Arabidopsis thaliana AT3G14180 D 0.943
fgenesh2_kg.3__1533__AT3G14180.1 Arabidopsis lyrata fgenesh2_kg.3__1533__AT3G14180.1 I 0.943
Bostr.28625s0287 Boechera stricta Bostr.28625s0287 I 0.943
Cagra.3631s0005 Capsella grandiflora Cagra.3631s0005 I 0.943
Carubv10015321m.g Capsella rubella Carubv10015321m.g I 0.943
Thhalv10020691m.g Eutrema salsugineum Thhalv10020691m.g I 0.943
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I 0.890
Bra021534 Brassica rapa Bra021534 I 0.878
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I 0.876
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I 0.867
MTR_8g022290 Medicago truncatula MTR_8g022290 I 0.864
MDP0000255104 Malus domestica MDP0000255104 I 0.861
MDP0000281471 Malus domestica MDP0000281471 I 0.861
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I 0.859
GSMUA_Achr8G23650_001 Musa acuminata GSMUA_Achr8G23650_001 I 0.858
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I 0.852
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I 0.848
Pm013209 Prunus mume Pm013209 I 0.848
Bo1g134590 Brassica oleracea Bo1g134590 I 0.847
GSMUA_Achr3G05880_001 Musa acuminata GSMUA_Achr3G05880_001 I 0.846
SELMODRAFT_68039 Selaginella moellendorffii SELMODRAFT_68039 I 0.845
SELMODRAFT_68041 Selaginella moellendorffii SELMODRAFT_68041 I 0.845
GLYMA16G01370 Glycine max GLYMA16G01370 I 0.839
Bra021536 Brassica rapa Bra021536 I 0.828
TCM_029209 Theobroma cacao TCM_029209 I 0.824
29727.m000472 Ricinus communis 29727.m000472 I 0.824
AMTR_s00021p00065350 Amborella trichopoda AMTR_s00021p00065350 I 0.822
ASIL1 Arabidopsis lyrata fgenesh2_kg.1__4489__AT1G54060.1 I 0.818
Bostr.7128s0077 Boechera stricta Bostr.7128s0077 I 0.818
PGSC0003DMG400007806 Solanum tuberosum PGSC0003DMG400007806 I 0.816
VIT_12s0028g02150 Vitis vinifera VIT_12s0028g02150 I 0.816
GSMUA_Achr9G14340_001 Musa acuminata GSMUA_Achr9G14340_001 N 0.812
Cagra.3631s0002 Capsella grandiflora Cagra.3631s0002 I 0.812