AMTR_s00021p00065350 (Amborella trichopoda)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 AMTR_s00021p00065350 T247843_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASIL2
M06973_2.00 		Arabidopsis thaliana
TCRCCGGARAH
DTYTCCGGYGA		 Dap-seq
OMalley et al.(2016)
At3g14180_col 		0.828 0.616
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN13891 MADF 44 124

Links

Other MADF family TFs
Other Amborella trichopoda TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.supercontig_209.41 Carica papaya evm.TU.supercontig_209.41 I 0.867
MTR_4g079960 Medicago truncatula MTR_4g079960 I 0.866
VIT_10s0003g01300 Vitis vinifera VIT_10s0003g01300 I 0.861
SELMODRAFT_68039 Selaginella moellendorffii SELMODRAFT_68039 I 0.858
SELMODRAFT_68041 Selaginella moellendorffii SELMODRAFT_68041 I 0.858
GLYMA13G36650 Glycine max GLYMA13G36650 I 0.851
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.842
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.830
ASIL2 Arabidopsis thaliana AT3G14180 D 0.828
fgenesh2_kg.3__1533__AT3G14180.1 Arabidopsis lyrata fgenesh2_kg.3__1533__AT3G14180.1 I 0.828
Bostr.28625s0287 Boechera stricta Bostr.28625s0287 I 0.828
Cagra.3631s0005 Capsella grandiflora Cagra.3631s0005 I 0.828
Carubv10015321m.g Capsella rubella Carubv10015321m.g I 0.828
Thhalv10020691m.g Eutrema salsugineum Thhalv10020691m.g I 0.828
29727.m000472 Ricinus communis 29727.m000472 I 0.827
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I 0.824
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.824
Bo3g065930 Brassica oleracea Bo3g065930 I 0.822
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.819
cassava34877.m1 Manihot esculenta cassava34877.m1 I 0.818
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I 0.818
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I 0.818
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I 0.817
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I 0.816
Pm013209 Prunus mume Pm013209 I 0.816
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I 0.816
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I 0.816
MDP0000255104 Malus domestica MDP0000255104 I 0.816
MDP0000281471 Malus domestica MDP0000281471 I 0.816
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I 0.816
GLYMA12G33850 Glycine max GLYMA12G33850 I 0.814
PK22475.1 Cannabis sativa PK22475.1 N 0.813