GRMZM2G137289 (Zea mays)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 GRMZM2G137289 T254300_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
DISCONTINUED: This record has been withdrawn by NCBI staff. This record represented a gene that is not currently annotated by NCBI.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL42
M06995_2.00 		Arabidopsis thaliana
RATGATG
CATCATY		 Dap-seq
OMalley et al.(2016)
AGL42_col_a 		0.750 0.750
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.750 0.750
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.750 0.750
AP3
M08146_2.00 		Arabidopsis thaliana
WDCCMAAARWRGHAA
TTDCYWYTTTKGGHW		 ChIP-seq
Mathelier et al.(2014)
MA0556.1 		0.750 0.750
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.750 0.750
Q40513_TOBAC
M11001_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DEF_01 		0.750 0.750
M17_MAIZE
M10959_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M17_01 		0.750 0.750
Q9AR49_MAIZE
M10980_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M29_01 		0.750 0.750
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.750 0.750
AP3
M10919_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSB_Q2 		0.750 0.750
AGL6
M06986_2.00 		Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA		 Dap-seq
OMalley et al.(2016)
AGL6_col_a 		0.708 0.708
squamosa
M02697_2.00 		Antirrhinum majus
MYAWAWAWRGHAAN
NTTDCYWTWTWTRK		 SELEX
Mathelier et al.(2014)
MA0082.1 		0.708 0.708
AGL1
M02694_2.00 		Arabidopsis thaliana
NDTDCCWWWWNDGGWAHN
NDTWCCHNWWWWGGHAHN		 SELEX
Mathelier et al.(2014)
MA0585.1 		0.708 0.708
AG
M02695_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHADN
NHTDCCHNWTWWGGWAAD		 SELEX
Mathelier et al.(2014)
MA0005.2 		0.708 0.708
AP1
M08144_2.00 		Arabidopsis thaliana
MYAAAAAWRGAAA
TTTCYWTTTTTRK		 ChIP-seq
Mathelier et al.(2014)
MA0940.1 		0.708 0.708
SOC1
M08425_2.00 		Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG		 ChIP-chip
Mathelier et al.(2014)
MA0554.1 		0.708 0.708
AG
M10923_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHWDN
NHTDCCHNWTWWGGWAAD		 Transfac
Matys et al.(2006)
P$AG_01 		0.708 0.708
AG
M10924_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_02 		0.708 0.708
AG
M10925_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_03 		0.708 0.708
AG_TOBAC
M10995_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG1_02 		0.708 0.708
AGL1
M10920_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL1_01 		0.708 0.708
AGL1
M10921_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL1_02 		0.708 0.708
SOC1
M10915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL20_01 		0.708 0.708
AG
M10926_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_Q2 		0.708 0.708
Q9LEI3_HORVU
M10985_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM3_01 		0.708 0.708
MLOC_61901
M10964_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM8_01 		0.708 0.708
Q40882_PETHY
M11003_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP11_01 		0.708 0.708
Q9ATE9_PETHY
M11012_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP20_01 		0.708 0.708
Q9ATE8_PETHY
M11011_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP21_01 		0.708 0.708
Q9ATE7_PETHY
M11010_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP22_01 		0.708 0.708
Q9ATE3_PETHY
M11008_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP28_01 		0.708 0.708
Q9ATF2_PETHY
M11014_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP5_01 		0.708 0.708
Q08711_PETHY
M10999_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP6_01 		0.708 0.708
Q43616_PETHY
M11004_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP7_01 		0.708 0.708
O82698_MALDO
M11021_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS10_01 		0.708 0.708
Q40591_TOBAC
M11002_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_03 		0.708 0.708
O82699_MALDO
M11022_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_01 		0.708 0.708
Q8GT99_TOBAC
M11006_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_02 		0.708 0.708
Q8VWZ4_MALDO
M11026_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS13_01 		0.708 0.708
MAD14_ORYSJ
M10960_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS14_01 		0.708 0.708
Q8VWZ3_MALDO
M11025_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS14_02 		0.708 0.708
MADS15
M10972_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS15_01 		0.708 0.708
Q8VWZ2_MALDO
M11024_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS15_02 		0.708 0.708
MAD17_ORYSJ
M10961_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS17_01 		0.708 0.708
MADS18
M10973_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS18_01 		0.708 0.708
MADS2
M10966_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_02 		0.708 0.708
Q9ZRA5_MALDO
M11030_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_04 		0.708 0.708
MADS3_ORYSJ
M10963_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_01 		0.708 0.708
AG_PETHY
M10994_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_02 		0.708 0.708
Q9FR84_MAIZE
M10981_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_03 		0.708 0.708
O82695_MALDO
M11019_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS5_01 		0.708 0.708
MADS6
M10967_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS6_01 		0.708 0.708
AP1
M10905_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSA_Q2 		0.708 0.708
Q9SBQ1_PETHY
M11017_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PFG_01 		0.708 0.708
SHP2
M10914_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SHP2_01 		0.708 0.708
Q38742_ANTMA
M11000_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SQUA_01 		0.708 0.708
Q84LI3_WHEAT
M10979_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAVRT1_01 		0.708 0.708
O82128_WHEAT
M10965_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WAP1_01 		0.708 0.708
Q41829_MAIZE
M10977_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ZAP1_02 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G137289_P01 MADS box 10 33

Links

Other MADS box family TFs
Other Zea mays TFs

146 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AP3 Populus trichocarpa POPTR_0002s02990 I 0.792
SapurV1A.0569s0080 Salix purpurea SapurV1A.0569s0080 I 0.792
29782.m000119 Ricinus communis 29782.m000119 I 0.792
POPTR_0007s13660 Populus trichocarpa POPTR_0007s13660 I 0.792
TT16 Vitis vinifera VIT_01s0011g01560 I 0.792
Gorai.002G142700 Gossypium raimondii Gorai.002G142700 I 0.750
evm.TU.supercontig_6.202 Carica papaya evm.TU.supercontig_6.202 I 0.750
evm.TU.supercontig_6.199 Carica papaya evm.TU.supercontig_6.199 I 0.750
Carubv10023941m.g Capsella rubella Carubv10023941m.g I 0.750
Gorai.003G090800 Gossypium raimondii Gorai.003G090800 I 0.750
Lus10025719.g Linum usitatissimum Lus10025719.g I 0.750
GRMZM2G334225 Zea mays GRMZM2G334225 I 0.750
Pavir.Fb01739 Panicum virgatum Pavir.Fb01739 I 0.750
MDP0000209705 Malus domestica MDP0000209705 I 0.750
Lus10035942.g Linum usitatissimum Lus10035942.g I 0.750
PGSC0003DMG401015205 Solanum tuberosum PGSC0003DMG401015205 I 0.750
Sb10g007810 Sorghum bicolor Sb10g007810 I 0.750
Bostr.19427s0024 Boechera stricta Bostr.19427s0024 I 0.750
Si013985m.g Setaria italica Si013985m.g I 0.750
Aquca_005_00477 Aquilegia coerulea Aquca_005_00477 N 0.750
Sb06g017660 Sorghum bicolor Sb06g017660 I 0.750
Cagra.1080s0011 Capsella grandiflora Cagra.1080s0011 I 0.750
SVP Vitis vinifera VIT_00s0313g00070 I 0.750
GRMZM2G152415 Zea mays GRMZM2G152415 I 0.750
POPTR_0007s14300 Populus trichocarpa POPTR_0007s14300 I 0.750
cassava42879.valid.m1 Manihot esculenta cassava42879.valid.m1 I 0.750
Gorai.010G035000 Gossypium raimondii Gorai.010G035000 I 0.750
Thhalv10000308m.g Eutrema salsugineum Thhalv10000308m.g I 0.750
SVP Arabidopsis lyrata fgenesh2_kg.4__174__AT2G22540.1 I 0.750
GLYMA01G02880 Glycine max GLYMA01G02880 I 0.750
Bra038511 Brassica rapa Bra038511 I 0.750
Bo8g101000 Brassica oleracea Bo8g101000 I 0.750
SVP Arabidopsis thaliana AT2G22540 D 0.750
chr2.CM0338.170.nc Lotus japonicus chr2.CM0338.170.nc I 0.750
Bo00946s010 Brassica oleracea Bo00946s010 I 0.750
GLYMA04G02980 Glycine max GLYMA04G02980 I 0.750
SapurV1A.1777s0020 Salix purpurea SapurV1A.1777s0020 I 0.750
Bostr.10199s0104 Boechera stricta Bostr.10199s0104 I 0.708
Aquca_032_00047 Aquilegia coerulea Aquca_032_00047 I 0.708
Aquca_015_00177 Aquilegia coerulea Aquca_015_00177 I 0.708
Q8VWZ4_MALDO Malus domestica Q8VWZ4_MALDO D 0.708
PK29837.1 Cannabis sativa PK29837.1 I 0.708
Bostr.10273s0459 Boechera stricta Bostr.10273s0459 I 0.708
Thhalv10026757m.g Eutrema salsugineum Thhalv10026757m.g I 0.708
SapurV1A.0129s0120 Salix purpurea SapurV1A.0129s0120 I 0.708
PK20651.1 Cannabis sativa PK20651.1 I 0.708
Pavir.Ia04538 Panicum virgatum Pavir.Ia04538 I 0.708
mgf007109m Mimulus guttatus mgf007109m I 0.708
Cucsa.160640 Cucumis sativus Cucsa.160640 I 0.708
Cla022499 Citrullus lanatus Cla022499 I 0.708
LjT46F13.10.nd Lotus japonicus LjT46F13.10.nd I 0.708
Ca_25684 Cicer arietinum Ca_25684 I 0.708
Ca_12381 Cicer arietinum Ca_12381 I 0.708
SapurV1A.0027s0860 Salix purpurea SapurV1A.0027s0860 I 0.708
Q40882_PETHY Petunia x hybrida Q40882_PETHY D 0.708
chr4.CM0100.30.nc Lotus japonicus chr4.CM0100.30.nc I 0.708
CM0547.50.nc Lotus japonicus CM0547.50.nc I 0.708
Q9ATE9_PETHY Petunia x hybrida Q9ATE9_PETHY D 0.708
Cagra.1157s0032 Capsella grandiflora Cagra.1157s0032 I 0.708
Thhalv10019025m.g Eutrema salsugineum Thhalv10019025m.g I 0.708
MDP0000184294 Malus domestica MDP0000184294 I 0.708
SapurV1A.0129s0130 Salix purpurea SapurV1A.0129s0130 I 0.708
MDP0000315938 Malus domestica MDP0000315938 I 0.708
SapurV1A.0187s0010 Salix purpurea SapurV1A.0187s0010 I 0.708
Gorai.003G103000 Gossypium raimondii Gorai.003G103000 I 0.708
Gorai.005G225500 Gossypium raimondii Gorai.005G225500 I 0.708
SapurV1A.0176s0500 Salix purpurea SapurV1A.0176s0500 I 0.708
Gorai.012G185500 Gossypium raimondii Gorai.012G185500 I 0.708
Ca_06280 Cicer arietinum Ca_06280 I 0.708
Gorai.008G115200 Gossypium raimondii Gorai.008G115200 I 0.708
evm.TU.supercontig_18.166 Carica papaya evm.TU.supercontig_18.166 I 0.708
evm.TU.supercontig_1.162 Carica papaya evm.TU.supercontig_1.162 I 0.708
Carubv10002792m.g Capsella rubella Carubv10002792m.g I 0.708
Pavir.Ea01057 Panicum virgatum Pavir.Ea01057 I 0.708
Cagra.4348s0011 Capsella grandiflora Cagra.4348s0011 I 0.708
Pavir.Ea03607 Panicum virgatum Pavir.Ea03607 I 0.708
SapurV1A.0072s0360 Salix purpurea SapurV1A.0072s0360 I 0.708
Carubv10022005m.g Capsella rubella Carubv10022005m.g I 0.708
Eucgr.J03007 Eucalyptus grandis Eucgr.J03007 I 0.708
Eucgr.I02048 Eucalyptus grandis Eucgr.I02048 I 0.708
SapurV1A.0323s0180 Salix purpurea SapurV1A.0323s0180 I 0.708
SapurV1A.0129s0140 Salix purpurea SapurV1A.0129s0140 I 0.708
Traes_1DS_F22A3DB6A Triticum aestivum Traes_1DS_F22A3DB6A I 0.708
LPERR01G34040 Leersia perrieri LPERR01G34040 I 0.708
LPERR07G00480 Leersia perrieri LPERR07G00480 I 0.708
GSMUA_Achr3G02280_001 Musa acuminata GSMUA_Achr3G02280_001 I 0.708
GSMUA_Achr10G14160_001 Musa acuminata GSMUA_Achr10G14160_001 I 0.708
GLYMA16G13070 Glycine max GLYMA16G13070 I 0.708
GLYMA18G12590 Glycine max GLYMA18G12590 I 0.708
LPERR07G18670 Leersia perrieri LPERR07G18670 I 0.708
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.708
OB05G24910 Oryza brachyantha OB05G24910 I 0.708
OBART01G39540 Oryza barthii OBART01G39540 I 0.708
OB01G48280 Oryza brachyantha OB01G48280 I 0.708
MTR_8g066260 Medicago truncatula MTR_8g066260 I 0.708
MTR_3g452380 Medicago truncatula MTR_3g452380 I 0.708
MTR_7g075850 Medicago truncatula MTR_7g075850 I 0.708
GLYMA10G38541 Glycine max GLYMA10G38541 I 0.708
GLYMA08G42300 Glycine max GLYMA08G42300 I 0.708
BGIOSGA018621 Oryza indica BGIOSGA018621 I 0.708
Bo4g195720 Brassica oleracea Bo4g195720 I 0.708
BGIOSGA000377 Oryza indica BGIOSGA000377 I 0.708
TT16 Arabidopsis thaliana AT5G23260 I 0.708
AP1 Arabidopsis thaliana AT1G69120 D 0.708
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.708
Bo9g014400 Brassica oleracea Bo9g014400 I 0.708
Bra038326 Brassica rapa Bra038326 I 0.708
AP1 Arabidopsis lyrata fgenesh2_kg.2__1169__AT1G69120.1 I 0.708
GLYMA08G36380 Glycine max GLYMA08G36380 I 0.708
F775_27908 Aegilops tauschii F775_27908 I 0.708
F775_08934 Aegilops tauschii F775_08934 I 0.708
BRADI3G32090 Brachypodium distachyon BRADI3G32090 I 0.708
F775_03584 Aegilops tauschii F775_03584 I 0.708
OGLUM01G43760 Oryza glumaepatula OGLUM01G43760 I 0.708
OLONG_003010 Oryza longistaminata OLONG_003010 I 0.708
TCM_015049 Theobroma cacao TCM_015049 I 0.708
Traes_1AS_985BB33A1 Triticum aestivum Traes_1AS_985BB33A1 I 0.708
TCM_011475 Theobroma cacao TCM_011475 I 0.708
Solyc01g087990.2 Solanum lycopersicum Solyc01g087990.2 I 0.708
SELMODRAFT_450804 Selaginella moellendorffii SELMODRAFT_450804 I 0.708
SELMODRAFT_450837 Selaginella moellendorffii SELMODRAFT_450837 I 0.708
Traes_1BS_1202C8C0D Triticum aestivum Traes_1BS_1202C8C0D I 0.708
AMTR_s00071p00193200 Amborella trichopoda AMTR_s00071p00193200 I 0.708
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.708
AGL24 Vitis vinifera VIT_18s0001g07460 I 0.708
TRIUR3_20588 Triticum urartu TRIUR3_20588 I 0.708
Traes_4DS_A28BC582A Triticum aestivum Traes_4DS_A28BC582A I 0.708
Traes_1DS_F70AAB507 Triticum aestivum Traes_1DS_F70AAB507 I 0.708
Traes_4BL_410DEBFD3 Triticum aestivum Traes_4BL_410DEBFD3 I 0.708
Sb01g030570 Sorghum bicolor Sb01g030570 I 0.708
POPTR_0012s14770 Populus trichocarpa POPTR_0012s14770 I 0.708
ORGLA01G0334300 Oryza glaberrima ORGLA01G0334300 I 0.708
ORUFI05G05970 Oryza rufipogon ORUFI05G05970 I 0.708
OPUNC06G14730 Oryza punctata OPUNC06G14730 N 0.708
OPUNC01G38250 Oryza punctata OPUNC01G38250 I 0.708
OMERI01G36400 Oryza meridionalis OMERI01G36400 I 0.708
ONIVA01G44390 Oryza nivara ONIVA01G44390 I 0.708
ORUFI05G07100 Oryza rufipogon ORUFI05G07100 I 0.708
MADS2 Oryza sativa OS01G0883100 D 0.708
PGSC0003DMG401024252 Solanum tuberosum PGSC0003DMG401024252 I 0.708
POPTR_0007s03270 Populus trichocarpa POPTR_0007s03270 I 0.708
PGSC0003DMG401006771 Solanum tuberosum PGSC0003DMG401006771 I 0.708
PGSC0003DMG400006290 Solanum tuberosum PGSC0003DMG400006290 N 0.708
OS05G0203800 Oryza sativa OS05G0203800 I 0.708
MADS23 Oryza sativa OS08G0431900 I 0.708
STK Vitis vinifera VIT_18s0041g01880 I 0.708