CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
POPTR_0001s33740
(
Populus trichocarpa
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
POPTR_0001s33740
T255801_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0001s33740.1
MADS box
3
48
SIRNEKSRMLTFRKRKTTLLKKVSDFSILCGVDACVIIFGPNQNDQ
Links
Other
MADS box
family TFs
Other
Populus trichocarpa
TFs
4 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SapurV1A.0278s0250
Salix purpurea
SapurV1A.0278s0250
N
0.913
POPTR_0012s11170
Populus trichocarpa
POPTR_0012s11170
N
0.804
SapurV1A.0252s0210
Salix purpurea
SapurV1A.0252s0210
N
0.800
POPTR_0002s25700
Populus trichocarpa
POPTR_0002s25700
N
0.783