Traes_7BS_209950516 (Triticum aestivum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Traes_7BS_209950516 T256612_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL16
M06987_2.00 		Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA		 Dap-seq
OMalley et al.(2016)
AGL16_col_a 		0.708 0.708
AGL16
M06988_2.00 		Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW		 Dap-seq
OMalley et al.(2016)
AGL16_colamp_a 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Traes_7BS_209950516.1 MADS box 10 57

Links

Other MADS box family TFs
Other Triticum aestivum TFs

82 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Traes_5DS_82FA431DB Triticum aestivum Traes_5DS_82FA431DB I 0.875
F775_15097 Aegilops tauschii F775_15097 I 0.854
F775_15098 Aegilops tauschii F775_15098 I 0.851
Traes_7DS_7F8C88C92 Triticum aestivum Traes_7DS_7F8C88C92 I 0.851
Traes_7AS_EFE436F1D Triticum aestivum Traes_7AS_EFE436F1D I 0.833
TRIUR3_09266 Triticum urartu TRIUR3_09266 I 0.833
Traes_5AS_E9E60BA43 Triticum aestivum Traes_5AS_E9E60BA43 I 0.812
GSMUA_Achr3G23580_001 Musa acuminata GSMUA_Achr3G23580_001 I 0.771
Traes_7DS_7A30E1397 Triticum aestivum Traes_7DS_7A30E1397 I 0.771
BGIOSGA022872 Oryza indica BGIOSGA022872 I 0.750
OBART06G14060 Oryza barthii OBART06G14060 I 0.750
OGLUM06G15040 Oryza glumaepatula OGLUM06G15040 I 0.750
OLONG_018231 Oryza longistaminata OLONG_018231 I 0.750
OMERI06G15180 Oryza meridionalis OMERI06G15180 I 0.750
ONIVA06G16870 Oryza nivara ONIVA06G16870 I 0.750
OPUNC06G13170 Oryza punctata OPUNC06G13170 I 0.750
ORGLA06G0125600 Oryza glaberrima ORGLA06G0125600 I 0.750
ORUFI06G14980 Oryza rufipogon ORUFI06G14980 I 0.750
OS06G0347700 Oryza sativa OS06G0347700 I 0.750
Pavir.Da00991 Panicum virgatum Pavir.Da00991 I 0.750
Bo1g007520 Brassica oleracea Bo1g007520 I 0.729
Bra011509 Brassica rapa Bra011509 I 0.729
AGL16 Arabidopsis lyrata fgenesh2_kg.5__2158__AT3G57230.1 I 0.729
GLYMA08G06991 Glycine max GLYMA08G06991 I 0.729
LPERR04G20730 Leersia perrieri LPERR04G20730 I 0.729
OB06G22200 Oryza brachyantha OB06G22200 I 0.729
SELMODRAFT_450818 Selaginella moellendorffii SELMODRAFT_450818 I 0.729
SELMODRAFT_450937 Selaginella moellendorffii SELMODRAFT_450937 I 0.729
Cla023427 Citrullus lanatus Cla023427 I 0.729
PK27158.1 Cannabis sativa PK27158.1 I 0.714
AGL16 Arabidopsis thaliana AT3G57230 D 0.708
BGIOSGA016105 Oryza indica BGIOSGA016105 I 0.708
BGIOSGA016106 Oryza indica BGIOSGA016106 I 0.708
BGIOSGA017110 Oryza indica BGIOSGA017110 I 0.708
Bo7g116760 Brassica oleracea Bo7g116760 I 0.708
Bra017638 Brassica rapa Bra017638 I 0.708
BRADI3G05260 Brachypodium distachyon BRADI3G05260 I 0.708
F775_05654 Aegilops tauschii F775_05654 I 0.708
F775_30836 Aegilops tauschii F775_30836 I 0.708
GRMZM2G161666 Zea mays GRMZM2G161666 I 0.708
GSMUA_Achr7G12610_001 Musa acuminata GSMUA_Achr7G12610_001 I 0.708
MLOC_12133 Hordeum vulgare MLOC_12133 I 0.708
MLOC_65966 Hordeum vulgare MLOC_65966 I 0.708
OBART04G07050 Oryza barthii OBART04G07050 I 0.708
OBART04G25610 Oryza barthii OBART04G25610 I 0.708
OGLUM04G06810 Oryza glumaepatula OGLUM04G06810 I 0.708
OGLUM04G25090 Oryza glumaepatula OGLUM04G25090 I 0.708
OLONG_009563 Oryza longistaminata OLONG_009563 I 0.708
OMERI04G20840 Oryza meridionalis OMERI04G20840 I 0.708
ONIVA04G05310 Oryza nivara ONIVA04G05310 I 0.708
OPUNC04G22650 Oryza punctata OPUNC04G22650 I 0.708
ORGLA04G0053100 Oryza glaberrima ORGLA04G0053100 I 0.708
ORGLA04G0222300 Oryza glaberrima ORGLA04G0222300 I 0.708
ORUFI04G08040 Oryza rufipogon ORUFI04G08040 I 0.708
ORUFI04G26810 Oryza rufipogon ORUFI04G26810 I 0.708
MADS25 Oryza sativa OS04G0304400 I 0.708
MADS31 Oryza sativa OS04G0614100 I 0.708
PGSC0003DMG400009349 Solanum tuberosum PGSC0003DMG400009349 I 0.708
POPTR_0006s04730 Populus trichocarpa POPTR_0006s04730 I 0.708
Si003917m.g Setaria italica Si003917m.g I 0.708
Solyc01g106170.2 Solanum lycopersicum Solyc01g106170.2 I 0.708
Solyc04g076680.2 Solanum lycopersicum Solyc04g076680.2 I 0.708
Solyc12g088080.1 Solanum lycopersicum Solyc12g088080.1 I 0.708
Traes_2AL_8DF89AA72 Triticum aestivum Traes_2AL_8DF89AA72 I 0.708
Traes_2DL_6CD5A5CD9 Triticum aestivum Traes_2DL_6CD5A5CD9 I 0.708
Traes_6AS_57E50EE92 Triticum aestivum Traes_6AS_57E50EE92 I 0.708
Traes_6BS_5789476CB Triticum aestivum Traes_6BS_5789476CB I 0.708
Traes_6DS_9BBDCC9F7 Triticum aestivum Traes_6DS_9BBDCC9F7 I 0.708
TRIUR3_18402 Triticum urartu TRIUR3_18402 I 0.708
TRIUR3_26896 Triticum urartu TRIUR3_26896 I 0.708
ANR1 Vitis vinifera VIT_18s0001g07900 I 0.708
29804.m001536 Ricinus communis 29804.m001536 I 0.708
cassava26340.m1 Manihot esculenta cassava26340.m1 I 0.708
Bostr.20505s0022 Boechera stricta Bostr.20505s0022 I 0.708
Cagra.0578s0054 Capsella grandiflora Cagra.0578s0054 I 0.708
Carubv10017951m.g Capsella rubella Carubv10017951m.g I 0.708
Eucgr.I02600 Eucalyptus grandis Eucgr.I02600 I 0.708
MDP0000475549 Malus domestica MDP0000475549 I 0.708
Thhalv10022995m.g Eutrema salsugineum Thhalv10022995m.g I 0.708
Thhalv10026116m.g Eutrema salsugineum Thhalv10026116m.g I 0.708
chr6.CM0055.180.nc Lotus japonicus chr6.CM0055.180.nc I 0.708
LjSGA_021013.1 Lotus japonicus LjSGA_021013.1 I 0.708