Ciclev10009338m.g (Citrus clementina)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Ciclev10009338m.g T257879_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q40513_TOBAC
M11001_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DEF_01 		0.792 0.792
AP3
M08146_2.00 		Arabidopsis thaliana
WDCCMAAARWRGHAA
TTDCYWYTTTKGGHW		 ChIP-seq
Mathelier et al.(2014)
MA0556.1 		0.771 0.771
AP3
M10919_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSB_Q2 		0.771 0.771
Q8VWZ4_MALDO
M11026_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS13_01 		0.729 0.729
MADS16
M10971_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS16_01 		0.729 0.729
M17_MAIZE
M10959_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M17_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10009338m MADS box 10 57
Ciclev10009472m MADS box 10 57
Ciclev10009742m MADS box 10 57

Links

Other MADS box family TFs
Other Citrus clementina TFs

147 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g024093m.g Citrus sinensis orange1.1g024093m.g I 1.000
Ciclev10002410m.g Citrus clementina Ciclev10002410m.g I 0.854
orange1.1g040046m.g Citrus sinensis orange1.1g040046m.g I 0.854
mgf015533m Mimulus guttatus mgf015533m I 0.833
GLYMA06G02990 Glycine max GLYMA06G02990 I 0.812
MTR_3g113030 Medicago truncatula MTR_3g113030 I 0.812
Ca_04909 Cicer arietinum Ca_04909 I 0.812
Cla021117 Citrullus lanatus Cla021117 I 0.812
Cucsa.342790 Cucumis sativus Cucsa.342790 I 0.812
chr1.CM0195.210.nc Lotus japonicus chr1.CM0195.210.nc I 0.812
Traes_7BL_7F4124E70 Triticum aestivum Traes_7BL_7F4124E70 I 0.800
GLYMA04G02980 Glycine max GLYMA04G02980 I 0.792
AP3 Vitis vinifera VIT_18s0001g13460 I 0.792
Q40513_TOBAC Nicotiana tabacum Q40513_TOBAC D 0.792
Eucgr.F01615 Eucalyptus grandis Eucgr.F01615 I 0.792
Lus10010630.g Linum usitatissimum Lus10010630.g I 0.792
Lus10031960.g Linum usitatissimum Lus10031960.g I 0.792
Lus10033187.g Linum usitatissimum Lus10033187.g I 0.792
AP3 Arabidopsis thaliana AT3G54340 D 0.771
AP3 Arabidopsis lyrata fgenesh2_kg.5__1825__AT3G54340.1 I 0.771
PGSC0003DMG400003709 Solanum tuberosum PGSC0003DMG400003709 I 0.771
Solyc04g081000.2 Solanum lycopersicum Solyc04g081000.2 I 0.771
Pm006266 Prunus mume Pm006266 I 0.771
Bostr.0697s0046 Boechera stricta Bostr.0697s0046 I 0.771
Cagra.0562s0025 Capsella grandiflora Cagra.0562s0025 I 0.771
Carubv10018833m.g Capsella rubella Carubv10018833m.g I 0.771
Gorai.003G011500 Gossypium raimondii Gorai.003G011500 I 0.771
Gorai.008G064900 Gossypium raimondii Gorai.008G064900 I 0.771
Bo4g120010 Brassica oleracea Bo4g120010 I 0.750
Bo8g083600 Brassica oleracea Bo8g083600 I 0.750
Bra007067 Brassica rapa Bra007067 I 0.750
Bra014822 Brassica rapa Bra014822 I 0.750
PRUPE_ppa026083mg Prunus persica PRUPE_ppa026083mg I 0.750
SELMODRAFT_450818 Selaginella moellendorffii SELMODRAFT_450818 I 0.750
SELMODRAFT_450937 Selaginella moellendorffii SELMODRAFT_450937 I 0.750
TCM_034148 Theobroma cacao TCM_034148 I 0.750
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 0.750
cassava21176.m1 Manihot esculenta cassava21176.m1 I 0.750
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.750
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.750
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.750
Ciclev10026433m.g Citrus clementina Ciclev10026433m.g I 0.750
orange1.1g027470m.g Citrus sinensis orange1.1g027470m.g I 0.750
Thhalv10010683m.g Eutrema salsugineum Thhalv10010683m.g I 0.750
mgf000046m Mimulus guttatus mgf000046m I 0.745
gene26118-v1.0-hybrid Fragaria vesca gene26118-v1.0-hybrid I 0.743
BGIOSGA007056 Oryza indica BGIOSGA007056 I 0.729
BGIOSGA020546 Oryza indica BGIOSGA020546 I 0.729
GLYMA08G11110 Glycine max GLYMA08G11110 I 0.729
GRMZM2G139073 Zea mays GRMZM2G139073 I 0.729
GSMUA_Achr3G23580_001 Musa acuminata GSMUA_Achr3G23580_001 I 0.729
LPERR02G04610 Leersia perrieri LPERR02G04610 I 0.729
LPERR06G22780 Leersia perrieri LPERR06G22780 I 0.729
MLOC_31575 Hordeum vulgare MLOC_31575 I 0.729
OB02G14670 Oryza brachyantha OB02G14670 I 0.729
OB06G35020 Oryza brachyantha OB06G35020 I 0.729
OBART02G05380 Oryza barthii OBART02G05380 I 0.729
OBART06G27230 Oryza barthii OBART06G27230 I 0.729
OGLUM02G05240 Oryza glumaepatula OGLUM02G05240 I 0.729
OGLUM06G28660 Oryza glumaepatula OGLUM06G28660 I 0.729
OLONG_004226 Oryza longistaminata OLONG_004226 I 0.729
OMERI02G06250 Oryza meridionalis OMERI02G06250 I 0.729
OMERI06G27290 Oryza meridionalis OMERI06G27290 I 0.729
ONIVA02G05710 Oryza nivara ONIVA02G05710 I 0.729
ONIVA06G29820 Oryza nivara ONIVA06G29820 I 0.729
OPUNC02G04560 Oryza punctata OPUNC02G04560 I 0.729
ORGLA02G0049700 Oryza glaberrima ORGLA02G0049700 I 0.729
ORGLA06G0229200 Oryza glaberrima ORGLA06G0229200 I 0.729
ORUFI02G05500 Oryza rufipogon ORUFI02G05500 I 0.729
ORUFI06G29170 Oryza rufipogon ORUFI06G29170 I 0.729
MADS29 Oryza sativa OS02G0170300 I 0.729
MADS16 Oryza sativa OS06G0712700 D 0.729
PGSC0003DMG400003541 Solanum tuberosum PGSC0003DMG400003541 I 0.729
POPTR_0005s12000 Populus trichocarpa POPTR_0005s12000 I 0.729
Sb10g029810 Sorghum bicolor Sb10g029810 I 0.729
Si007221m.g Setaria italica Si007221m.g I 0.729
Solyc02g084630.2 Solanum lycopersicum Solyc02g084630.2 I 0.729
TCM_014661 Theobroma cacao TCM_014661 I 0.729
Traes_7AL_1C76E543C Triticum aestivum Traes_7AL_1C76E543C I 0.729
Traes_7DL_DDCC09B24 Triticum aestivum Traes_7DL_DDCC09B24 I 0.729
TRIUR3_29719 Triticum urartu TRIUR3_29719 I 0.729
cassava33649.m1 Manihot esculenta cassava33649.m1 I 0.729
Aquca_006_00072 Aquilegia coerulea Aquca_006_00072 I 0.729
Eucgr.I02376 Eucalyptus grandis Eucgr.I02376 I 0.729
evm.TU.supercontig_6.199 Carica papaya evm.TU.supercontig_6.199 I 0.729
evm.TU.supercontig_6.202 Carica papaya evm.TU.supercontig_6.202 I 0.729
gene14896-v1.0-hybrid Fragaria vesca gene14896-v1.0-hybrid I 0.729
Gorai.009G271100 Gossypium raimondii Gorai.009G271100 I 0.729
MDP0000133037 Malus domestica MDP0000133037 I 0.729
MDP0000184294 Malus domestica MDP0000184294 I 0.729
MDP0000224779 Malus domestica MDP0000224779 I 0.729
MDP0000315938 Malus domestica MDP0000315938 I 0.729
Pavir.Db00185 Panicum virgatum Pavir.Db00185 I 0.729
Pavir.J11672 Panicum virgatum Pavir.J11672 I 0.729
Q8VWZ4_MALDO Malus domestica Q8VWZ4_MALDO D 0.729
SapurV1A.2002s0050 Salix purpurea SapurV1A.2002s0050 I 0.729
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.724
GLYMA05G28130 Glycine max GLYMA05G28130 I 0.723
Pm026712 Prunus mume Pm026712 I 0.723
OB11G21480 Oryza brachyantha OB11G21480 I 0.714
Bo4g024850 Brassica oleracea Bo4g024850 I 0.708
Bra004928 Brassica rapa Bra004928 I 0.708
BRADI1G35000 Brachypodium distachyon BRADI1G35000 I 0.708
BRADI3G05260 Brachypodium distachyon BRADI3G05260 I 0.708
F775_30836 Aegilops tauschii F775_30836 I 0.708
GLYMA08G06991 Glycine max GLYMA08G06991 I 0.708
GRMZM2G032905 Zea mays GRMZM2G032905 I 0.708
GRMZM2G130382 Zea mays GRMZM2G130382 I 0.708
GSMUA_Achr5G01230_001 Musa acuminata GSMUA_Achr5G01230_001 I 0.708
M17_MAIZE Zea mays M17_MAIZE D 0.708
MLOC_65966 Hordeum vulgare MLOC_65966 I 0.708
OBART08G15610 Oryza barthii OBART08G15610 I 0.708
ORGLA08G0137000 Oryza glaberrima ORGLA08G0137000 I 0.708
AP3 Populus trichocarpa POPTR_0002s02990 I 0.708
POPTR_0007s13660 Populus trichocarpa POPTR_0007s13660 I 0.708
PRUPE_ppa010727mg Prunus persica PRUPE_ppa010727mg I 0.708
Sb04g004736 Sorghum bicolor Sb04g004736 I 0.708
Sb06g019040 Sorghum bicolor Sb06g019040 I 0.708
SELMODRAFT_449545 Selaginella moellendorffii SELMODRAFT_449545 I 0.708
SELMODRAFT_449594 Selaginella moellendorffii SELMODRAFT_449594 I 0.708
SELMODRAFT_450804 Selaginella moellendorffii SELMODRAFT_450804 I 0.708
SELMODRAFT_450837 Selaginella moellendorffii SELMODRAFT_450837 I 0.708
Si012517m.g Setaria italica Si012517m.g I 0.708
Si018183m.g Setaria italica Si018183m.g I 0.708
TCM_000266 Theobroma cacao TCM_000266 I 0.708
TCM_007324 Theobroma cacao TCM_007324 I 0.708
Traes_6AS_57E50EE92 Triticum aestivum Traes_6AS_57E50EE92 I 0.708
Traes_6BS_5789476CB Triticum aestivum Traes_6BS_5789476CB I 0.708
Traes_6DS_9BBDCC9F7 Triticum aestivum Traes_6DS_9BBDCC9F7 I 0.708
TRIUR3_26896 Triticum urartu TRIUR3_26896 I 0.708
TT16 Vitis vinifera VIT_01s0011g01560 I 0.708
29782.m000119 Ricinus communis 29782.m000119 I 0.708
29804.m001536 Ricinus communis 29804.m001536 I 0.708
mgf025830m Mimulus guttatus mgf025830m I 0.708
Aquca_007_00336 Aquilegia coerulea Aquca_007_00336 I 0.708
Eucgr.I02600 Eucalyptus grandis Eucgr.I02600 I 0.708
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.708
Gorai.007G043400 Gossypium raimondii Gorai.007G043400 I 0.708
Gorai.008G018100 Gossypium raimondii Gorai.008G018100 I 0.708
Pavir.Aa03173 Panicum virgatum Pavir.Aa03173 I 0.708
Pavir.Ab00475 Panicum virgatum Pavir.Ab00475 I 0.708
Pavir.Da00991 Panicum virgatum Pavir.Da00991 I 0.708
Pavir.Ga01454 Panicum virgatum Pavir.Ga01454 I 0.708
Pavir.Gb01527 Panicum virgatum Pavir.Gb01527 I 0.708
SapurV1A.0569s0080 Salix purpurea SapurV1A.0569s0080 I 0.708
gene22696-v1.0-hybrid Fragaria vesca gene22696-v1.0-hybrid I 0.702