Ciclev10026433m.g (Citrus clementina)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Ciclev10026433m.g T257903_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q8VWZ4_MALDO
M11026_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS13_01 		0.896 0.896
Q40513_TOBAC
M11001_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DEF_01 		0.833 0.833
AP3
M08146_2.00 		Arabidopsis thaliana
WDCCMAAARWRGHAA
TTDCYWYTTTKGGHW		 ChIP-seq
Mathelier et al.(2014)
MA0556.1 		0.792 0.792
MADS2_PETHY
M10998_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_01 		0.792 0.792
AP3
M10919_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSB_Q2 		0.792 0.792
MADS16
M10971_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS16_01 		0.771 0.771
Q9AVU7_MALDO
M11027_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PI_01 		0.771 0.771
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10026433m MADS box 10 57

Links

Other MADS box family TFs
Other Citrus clementina TFs

133 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 0.979
orange1.1g027470m.g Citrus sinensis orange1.1g027470m.g I 0.979
evm.TU.supercontig_6.202 Carica papaya evm.TU.supercontig_6.202 I 0.938
cassava33649.m1 Manihot esculenta cassava33649.m1 I 0.938
POPTR_0005s12000 Populus trichocarpa POPTR_0005s12000 I 0.938
evm.TU.supercontig_6.199 Carica papaya evm.TU.supercontig_6.199 I 0.938
cassava21176.m1 Manihot esculenta cassava21176.m1 I 0.938
SapurV1A.2002s0050 Salix purpurea SapurV1A.2002s0050 I 0.917
Gorai.008G064900 Gossypium raimondii Gorai.008G064900 I 0.917
Pm026712 Prunus mume Pm026712 I 0.915
MDP0000133037 Malus domestica MDP0000133037 I 0.896
SapurV1A.0569s0080 Salix purpurea SapurV1A.0569s0080 I 0.896
MDP0000315938 Malus domestica MDP0000315938 I 0.896
Q8VWZ4_MALDO Malus domestica Q8VWZ4_MALDO D 0.896
MDP0000224779 Malus domestica MDP0000224779 I 0.896
PRUPE_ppa010727mg Prunus persica PRUPE_ppa010727mg I 0.896
POPTR_0007s13660 Populus trichocarpa POPTR_0007s13660 I 0.896
MDP0000184294 Malus domestica MDP0000184294 I 0.896
PRUPE_ppa026083mg Prunus persica PRUPE_ppa026083mg I 0.875
29782.m000119 Ricinus communis 29782.m000119 I 0.875
Cucsa.342790 Cucumis sativus Cucsa.342790 I 0.875
TCM_000266 Theobroma cacao TCM_000266 I 0.875
AP3 Vitis vinifera VIT_18s0001g13460 I 0.875
Gorai.003G011500 Gossypium raimondii Gorai.003G011500 I 0.875
SapurV1A.0396s0210 Salix purpurea SapurV1A.0396s0210 I 0.875
Cla021117 Citrullus lanatus Cla021117 I 0.875
chr1.CM0195.210.nc Lotus japonicus chr1.CM0195.210.nc I 0.854
gene14896-v1.0-hybrid Fragaria vesca gene14896-v1.0-hybrid I 0.854
Ca_04909 Cicer arietinum Ca_04909 I 0.854
AMTR_s00001p00217560 Amborella trichopoda AMTR_s00001p00217560 I 0.854
MTR_3g113030 Medicago truncatula MTR_3g113030 I 0.854
Pm006266 Prunus mume Pm006266 I 0.854
GLYMA06G02990 Glycine max GLYMA06G02990 I 0.854
GLYMA01G37470 Glycine max GLYMA01G37470 I 0.833
Eucgr.F01615 Eucalyptus grandis Eucgr.F01615 I 0.833
Lus10033187.g Linum usitatissimum Lus10033187.g I 0.833
Solyc02g084630.2 Solanum lycopersicum Solyc02g084630.2 I 0.833
GLYMA11G07820 Glycine max GLYMA11G07820 I 0.833
Ciclev10002410m.g Citrus clementina Ciclev10002410m.g I 0.833
GLYMA04G02980 Glycine max GLYMA04G02980 I 0.833
Q40513_TOBAC Nicotiana tabacum Q40513_TOBAC D 0.833
orange1.1g040046m.g Citrus sinensis orange1.1g040046m.g I 0.833
MTR_5g021270 Medicago truncatula MTR_5g021270 I 0.833
chr2.CM0249.370.nd Lotus japonicus chr2.CM0249.370.nd I 0.833
Ca_01994 Cicer arietinum Ca_01994 I 0.833
PGSC0003DMG400003541 Solanum tuberosum PGSC0003DMG400003541 I 0.833
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.812
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.812
GSMUA_Achr9G20950_001 Musa acuminata GSMUA_Achr9G20950_001 I 0.812
GSMUA_Achr9G20940_001 Musa acuminata GSMUA_Achr9G20940_001 I 0.812
Lus10031960.g Linum usitatissimum Lus10031960.g I 0.812
mgf015533m Mimulus guttatus mgf015533m I 0.812
Lus10010630.g Linum usitatissimum Lus10010630.g I 0.812
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.812
AMTR_s00066p00109320 Amborella trichopoda AMTR_s00066p00109320 I 0.812
Aquca_006_00072 Aquilegia coerulea Aquca_006_00072 I 0.812
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.792
AP3 Arabidopsis thaliana AT3G54340 D 0.792
AP3 Arabidopsis lyrata fgenesh2_kg.5__1825__AT3G54340.1 I 0.792
Bostr.0697s0046 Boechera stricta Bostr.0697s0046 I 0.792
Cagra.0562s0025 Capsella grandiflora Cagra.0562s0025 I 0.792
Carubv10018833m.g Capsella rubella Carubv10018833m.g I 0.792
Gorai.009G271100 Gossypium raimondii Gorai.009G271100 I 0.792
PGSC0003DMG400003709 Solanum tuberosum PGSC0003DMG400003709 I 0.792
AP3 Populus trichocarpa POPTR_0002s02990 I 0.792
Solyc04g081000.2 Solanum lycopersicum Solyc04g081000.2 I 0.792
Eucgr.I02376 Eucalyptus grandis Eucgr.I02376 I 0.771
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.771
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.771
Aquca_007_00336 Aquilegia coerulea Aquca_007_00336 I 0.771
Traes_7DL_DDCC09B24 Triticum aestivum Traes_7DL_DDCC09B24 I 0.771
OB06G35020 Oryza brachyantha OB06G35020 I 0.771
MLOC_31575 Hordeum vulgare MLOC_31575 I 0.771
LPERR06G22780 Leersia perrieri LPERR06G22780 I 0.771
OBART06G27230 Oryza barthii OBART06G27230 I 0.771
OGLUM06G28660 Oryza glumaepatula OGLUM06G28660 I 0.771
ONIVA06G29820 Oryza nivara ONIVA06G29820 I 0.771
OLONG_004226 Oryza longistaminata OLONG_004226 I 0.771
GRMZM2G139073 Zea mays GRMZM2G139073 I 0.771
Thhalv10010683m.g Eutrema salsugineum Thhalv10010683m.g I 0.771
Bo4g120010 Brassica oleracea Bo4g120010 I 0.771
BGIOSGA020546 Oryza indica BGIOSGA020546 I 0.771
Bo8g083600 Brassica oleracea Bo8g083600 I 0.771
Bra007067 Brassica rapa Bra007067 I 0.771
BRADI1G35000 Brachypodium distachyon BRADI1G35000 I 0.771
Bra014822 Brassica rapa Bra014822 I 0.771
ORGLA06G0229200 Oryza glaberrima ORGLA06G0229200 I 0.771
OMERI06G27290 Oryza meridionalis OMERI06G27290 I 0.771
Traes_7AL_1C76E543C Triticum aestivum Traes_7AL_1C76E543C I 0.771
Sb10g029810 Sorghum bicolor Sb10g029810 I 0.771
Si007221m.g Setaria italica Si007221m.g I 0.771
ORUFI06G29170 Oryza rufipogon ORUFI06G29170 I 0.771
TCM_034148 Theobroma cacao TCM_034148 I 0.771
TRIUR3_29719 Triticum urartu TRIUR3_29719 I 0.771
MADS16 Oryza sativa OS06G0712700 D 0.771
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.771
Pavir.Db00185 Panicum virgatum Pavir.Db00185 I 0.771
Pavir.J11672 Panicum virgatum Pavir.J11672 I 0.771
TCM_035212 Theobroma cacao TCM_035212 I 0.750
orange1.1g040096m.g Citrus sinensis orange1.1g040096m.g I 0.750
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.750
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.750
SapurV1A.0025s0830 Salix purpurea SapurV1A.0025s0830 I 0.750
29648.m001978 Ricinus communis 29648.m001978 I 0.750
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 0.750
Ciclev10009338m.g Citrus clementina Ciclev10009338m.g I 0.750
orange1.1g024093m.g Citrus sinensis orange1.1g024093m.g I 0.750
gene11267-v1.0-hybrid Fragaria vesca gene11267-v1.0-hybrid I 0.750
Solyc06g059970.2 Solanum lycopersicum Solyc06g059970.2 I 0.750
mgf000046m Mimulus guttatus mgf000046m I 0.745
Pm004718 Prunus mume Pm004718 I 0.729
Ca_13111 Cicer arietinum Ca_13111 I 0.729
gene11268-v1.0-hybrid Fragaria vesca gene11268-v1.0-hybrid I 0.729
PI Vitis vinifera VIT_18s0001g01760 I 0.729
PRUPE_ppa012927mg Prunus persica PRUPE_ppa012927mg I 0.729
cassava32003.m1 Manihot esculenta cassava32003.m1 I 0.729
Cla023547 Citrullus lanatus Cla023547 I 0.729
Aquca_006_00074 Aquilegia coerulea Aquca_006_00074 I 0.729
Cucsa.018420 Cucumis sativus Cucsa.018420 I 0.729
GLYMA14G24590 Glycine max GLYMA14G24590 I 0.708
LjSGA_047687.2 Lotus japonicus LjSGA_047687.2 I 0.708
MTR_3g088615 Medicago truncatula MTR_3g088615 I 0.708
GLYMA04G42420 Glycine max GLYMA04G42420 I 0.708
OPUNC06G24880 Oryza punctata OPUNC06G24880 I 0.708
GLYMA06G12380 Glycine max GLYMA06G12380 I 0.708
GLYMA13G09660 Glycine max GLYMA13G09660 I 0.708
Ca_03887 Cicer arietinum Ca_03887 I 0.708
estExt_gwp_gw1.C_900087 Physcomitrella patens estExt_gwp_gw1.C_900087 I 0.708
Ciclev10002422m.g Citrus clementina Ciclev10002422m.g I 0.708
estExt_gwp_gw1.C_1630046 Physcomitrella patens estExt_gwp_gw1.C_1630046 I 0.708
orange1.1g042044m.g Citrus sinensis orange1.1g042044m.g I 0.708
TT16 Vitis vinifera VIT_01s0011g01560 I 0.708
POPTR_0012s10190 Populus trichocarpa POPTR_0012s10190 I 0.708