CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Ciclev10002471m.g
(
Citrus clementina
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Ciclev10002471m.g
T257849_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q9AVU7_MALDO
M11027_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PI_01
0.896
0.896
MADS2_PETHY
M10998_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_01
0.875
0.875
FBP1_PETHY
M10996_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP1_01
0.854
0.854
PI
M08148_2.00
Arabidopsis thaliana
MCMAAARWRGAAAR
YTTTCYWYTTTKGK
ChIP-seq
Mathelier et al.(2014)
MA0559.1
0.812
0.812
Q8VWZ4_MALDO
M11026_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS13_01
0.729
0.729
AP3
M08146_2.00
Arabidopsis thaliana
WDCCMAAARWRGHAA
TTDCYWYTTTKGGHW
ChIP-seq
Mathelier et al.(2014)
MA0556.1
0.708
0.708
Q40513_TOBAC
M11001_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DEF_01
0.708
0.708
AP3
M10919_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADSB_Q2
0.708
0.708
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ciclev10002471m
MADS box
10
57
RIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDY
Links
Other
MADS box
family TFs
Other
Citrus clementina
TFs
113 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
orange1.1g040096m.g
Citrus sinensis
orange1.1g040096m.g
I
1.000
Ca_13111
Cicer arietinum
Ca_13111
I
0.917
cassava33721.m1
Manihot esculenta
cassava33721.m1
I
0.917
gene11268-v1.0-hybrid
Fragaria vesca
gene11268-v1.0-hybrid
I
0.917
Gorai.005G087600
Gossypium raimondii
Gorai.005G087600
I
0.917
GLYMA13G09660
Glycine max
GLYMA13G09660
I
0.896
GLYMA14G24590
Glycine max
GLYMA14G24590
I
0.896
TCM_035212
Theobroma cacao
TCM_035212
I
0.896
29648.m001978
Ricinus communis
29648.m001978
I
0.896
evm.TU.supercontig_26.316
Carica papaya
evm.TU.supercontig_26.316
I
0.896
Q9AVU7_MALDO
Malus domestica
Q9AVU7_MALDO
D
0.896
LjSGA_047687.2
Lotus japonicus
LjSGA_047687.2
I
0.896
PRUPE_ppa012927mg
Prunus persica
PRUPE_ppa012927mg
I
0.875
Solyc06g059970.2
Solanum lycopersicum
Solyc06g059970.2
I
0.875
PI
Vitis vinifera
VIT_18s0001g01760
I
0.875
Cla023547
Citrullus lanatus
Cla023547
I
0.875
Pm004718
Prunus mume
Pm004718
I
0.875
MADS2_PETHY
Petunia x hybrida
MADS2_PETHY
D
0.875
cassava32003.m1
Manihot esculenta
cassava32003.m1
I
0.875
Cucsa.018420
Cucumis sativus
Cucsa.018420
I
0.875
Ciclev10002422m.g
Citrus clementina
Ciclev10002422m.g
I
0.875
Gorai.002G223100
Gossypium raimondii
Gorai.002G223100
I
0.875
Lus10029719.g
Linum usitatissimum
Lus10029719.g
I
0.875
Lus10042749.g
Linum usitatissimum
Lus10042749.g
I
0.875
orange1.1g042044m.g
Citrus sinensis
orange1.1g042044m.g
I
0.875
POPTR_0005s20480
Populus trichocarpa
POPTR_0005s20480
I
0.854
FBP1_PETHY
Petunia x hybrida
FBP1_PETHY
D
0.854
gene11267-v1.0-hybrid
Fragaria vesca
gene11267-v1.0-hybrid
I
0.854
GLYMA04G42420
Glycine max
GLYMA04G42420
I
0.833
GLYMA06G12380
Glycine max
GLYMA06G12380
I
0.833
PGSC0003DMG401007392
Solanum tuberosum
PGSC0003DMG401007392
I
0.833
POPTR_0002s07920
Populus trichocarpa
POPTR_0002s07920
I
0.833
Solyc08g067230.2
Solanum lycopersicum
Solyc08g067230.2
I
0.833
mgf003143m
Mimulus guttatus
mgf003143m
I
0.833
mgf006158m
Mimulus guttatus
mgf006158m
I
0.833
mgf008207m
Mimulus guttatus
mgf008207m
I
0.833
PI
Arabidopsis thaliana
AT5G20240
D
0.812
Bo3g010390
Brassica oleracea
Bo3g010390
I
0.812
PI
Arabidopsis lyrata
fgenesh2_kg.6__2063__AT5G20240.1
I
0.812
MTR_1g029670
Medicago truncatula
MTR_1g029670
I
0.812
MTR_3g088615
Medicago truncatula
MTR_3g088615
I
0.812
Ca_03887
Cicer arietinum
Ca_03887
I
0.812
Bostr.26527s0175
Boechera stricta
Bostr.26527s0175
I
0.812
Cagra.0179s0008
Capsella grandiflora
Cagra.0179s0008
I
0.812
Carubv10001962m.g
Capsella rubella
Carubv10001962m.g
I
0.812
SapurV1A.0829s0180
Salix purpurea
SapurV1A.0829s0180
I
0.812
Thhalv10014683m.g
Eutrema salsugineum
Thhalv10014683m.g
I
0.812
Traes_7BL_7F4124E70
Triticum aestivum
Traes_7BL_7F4124E70
I
0.800
Bo2g020730
Brassica oleracea
Bo2g020730
I
0.792
Bo3g014100
Brassica oleracea
Bo3g014100
I
0.792
Bra006549
Brassica rapa
Bra006549
I
0.792
Bra020093
Brassica rapa
Bra020093
I
0.792
Eucgr.E01006
Eucalyptus grandis
Eucgr.E01006
I
0.792
Bo9g152080
Brassica oleracea
Bo9g152080
I
0.771
Bra002285
Brassica rapa
Bra002285
I
0.771
Pm006266
Prunus mume
Pm006266
I
0.771
Eucgr.E01007
Eucalyptus grandis
Eucgr.E01007
I
0.771
Gorai.008G064900
Gossypium raimondii
Gorai.008G064900
I
0.771
PRUPE_ppa026083mg
Prunus persica
PRUPE_ppa026083mg
I
0.750
TCM_000266
Theobroma cacao
TCM_000266
I
0.750
VIT_04s0023g02820
Vitis vinifera
VIT_04s0023g02820
I
0.750
AP3
Vitis vinifera
VIT_18s0001g13460
I
0.750
cassava21176.m1
Manihot esculenta
cassava21176.m1
I
0.750
Ciclev10026433m.g
Citrus clementina
Ciclev10026433m.g
I
0.750
orange1.1g027470m.g
Citrus sinensis
orange1.1g027470m.g
I
0.750
Pm026712
Prunus mume
Pm026712
I
0.745
AMTR_s00001p00217560
Amborella trichopoda
AMTR_s00001p00217560
I
0.729
GLYMA04G02980
Glycine max
GLYMA04G02980
I
0.729
GLYMA06G02990
Glycine max
GLYMA06G02990
I
0.729
MTR_3g113030
Medicago truncatula
MTR_3g113030
I
0.729
PGSC0003DMG400003541
Solanum tuberosum
PGSC0003DMG400003541
I
0.729
PRUPE_ppa010727mg
Prunus persica
PRUPE_ppa010727mg
I
0.729
Solyc02g084630.2
Solanum lycopersicum
Solyc02g084630.2
I
0.729
Ca_04909
Cicer arietinum
Ca_04909
I
0.729
Cla021117
Citrullus lanatus
Cla021117
I
0.729
cassava33649.m1
Manihot esculenta
cassava33649.m1
I
0.729
Cucsa.342790
Cucumis sativus
Cucsa.342790
I
0.729
evm.TU.supercontig_6.199
Carica papaya
evm.TU.supercontig_6.199
I
0.729
evm.TU.supercontig_6.202
Carica papaya
evm.TU.supercontig_6.202
I
0.729
Gorai.003G011500
Gossypium raimondii
Gorai.003G011500
I
0.729
MDP0000133037
Malus domestica
MDP0000133037
I
0.729
MDP0000184294
Malus domestica
MDP0000184294
I
0.729
MDP0000224779
Malus domestica
MDP0000224779
I
0.729
MDP0000315938
Malus domestica
MDP0000315938
I
0.729
Q8VWZ4_MALDO
Malus domestica
Q8VWZ4_MALDO
D
0.729
chr1.CM0195.210.nc
Lotus japonicus
chr1.CM0195.210.nc
I
0.729
gene26118-v1.0-hybrid
Fragaria vesca
gene26118-v1.0-hybrid
I
0.714
AP3
Arabidopsis thaliana
AT3G54340
D
0.708
BRADI1G35000
Brachypodium distachyon
BRADI1G35000
I
0.708
AP3
Arabidopsis lyrata
fgenesh2_kg.5__1825__AT3G54340.1
I
0.708
GLYMA01G37470
Glycine max
GLYMA01G37470
I
0.708
GLYMA11G07820
Glycine max
GLYMA11G07820
I
0.708
GSMUA_Achr6G18670_001
Musa acuminata
GSMUA_Achr6G18670_001
I
0.708
MTR_5g021270
Medicago truncatula
MTR_5g021270
I
0.708
POPTR_0005s12000
Populus trichocarpa
POPTR_0005s12000
I
0.708
Sb03g041860
Sorghum bicolor
Sb03g041860
I
0.708
Ca_01994
Cicer arietinum
Ca_01994
I
0.708
Q40513_TOBAC
Nicotiana tabacum
Q40513_TOBAC
D
0.708
29782.m000119
Ricinus communis
29782.m000119
I
0.708
cassava37821.valid.m1
Manihot esculenta
cassava37821.valid.m1
I
0.708
cassava37822.valid.m1
Manihot esculenta
cassava37822.valid.m1
I
0.708
cassava41235.m1
Manihot esculenta
cassava41235.m1
I
0.708
Aquca_006_00072
Aquilegia coerulea
Aquca_006_00072
I
0.708
Bostr.0697s0046
Boechera stricta
Bostr.0697s0046
I
0.708
Cagra.0562s0025
Capsella grandiflora
Cagra.0562s0025
I
0.708
Carubv10018833m.g
Capsella rubella
Carubv10018833m.g
I
0.708
Ciclev10002410m.g
Citrus clementina
Ciclev10002410m.g
I
0.708
Eucgr.F01615
Eucalyptus grandis
Eucgr.F01615
I
0.708
gene14896-v1.0-hybrid
Fragaria vesca
gene14896-v1.0-hybrid
I
0.708
Lus10033187.g
Linum usitatissimum
Lus10033187.g
I
0.708
orange1.1g040046m.g
Citrus sinensis
orange1.1g040046m.g
I
0.708
SapurV1A.2002s0050
Salix purpurea
SapurV1A.2002s0050
I
0.708
chr2.CM0249.370.nd
Lotus japonicus
chr2.CM0249.370.nd
I
0.708