Ca_03887 (Cicer arietinum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Ca_03887 T256885_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MADS2_PETHY
M10998_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_01 		0.875 0.875
FBP1_PETHY
M10996_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP1_01 		0.854 0.854
Q9AVU7_MALDO
M11027_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PI_01 		0.812 0.812
O82695_MALDO
M11019_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS5_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ca_03887 MADS box 10 57

Links

Other MADS box family TFs
Other Cicer arietinum TFs

93 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_3g088615 Medicago truncatula MTR_3g088615 I 1.000
GLYMA04G42420 Glycine max GLYMA04G42420 I 0.958
GLYMA06G12380 Glycine max GLYMA06G12380 I 0.958
GLYMA13G09660 Glycine max GLYMA13G09660 I 0.917
GLYMA14G24590 Glycine max GLYMA14G24590 I 0.917
LjSGA_047687.2 Lotus japonicus LjSGA_047687.2 I 0.917
Ca_13111 Cicer arietinum Ca_13111 I 0.896
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.875
MTR_1g029670 Medicago truncatula MTR_1g029670 I 0.854
PGSC0003DMG401007392 Solanum tuberosum PGSC0003DMG401007392 I 0.854
Solyc08g067230.2 Solanum lycopersicum Solyc08g067230.2 I 0.854
TCM_035212 Theobroma cacao TCM_035212 I 0.854
Cla023547 Citrullus lanatus Cla023547 I 0.854
FBP1_PETHY Petunia x hybrida FBP1_PETHY D 0.854
29648.m001978 Ricinus communis 29648.m001978 I 0.854
cassava32003.m1 Manihot esculenta cassava32003.m1 I 0.854
Cucsa.018420 Cucumis sativus Cucsa.018420 I 0.854
Eucgr.E01006 Eucalyptus grandis Eucgr.E01006 I 0.854
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.854
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.854
POPTR_0005s20480 Populus trichocarpa POPTR_0005s20480 I 0.833
PI Vitis vinifera VIT_18s0001g01760 I 0.833
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.833
mgf003143m Mimulus guttatus mgf003143m I 0.833
mgf006158m Mimulus guttatus mgf006158m I 0.833
mgf008207m Mimulus guttatus mgf008207m I 0.833
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.833
POPTR_0002s07920 Populus trichocarpa POPTR_0002s07920 I 0.812
PRUPE_ppa012927mg Prunus persica PRUPE_ppa012927mg I 0.812
Pm004718 Prunus mume Pm004718 I 0.812
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 0.812
gene11267-v1.0-hybrid Fragaria vesca gene11267-v1.0-hybrid I 0.812
orange1.1g040096m.g Citrus sinensis orange1.1g040096m.g I 0.812
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.812
Solyc06g059970.2 Solanum lycopersicum Solyc06g059970.2 I 0.792
Ciclev10002422m.g Citrus clementina Ciclev10002422m.g I 0.792
Eucgr.E01007 Eucalyptus grandis Eucgr.E01007 I 0.792
gene11268-v1.0-hybrid Fragaria vesca gene11268-v1.0-hybrid I 0.792
orange1.1g042044m.g Citrus sinensis orange1.1g042044m.g I 0.792
SapurV1A.0829s0180 Salix purpurea SapurV1A.0829s0180 I 0.792
Lus10029719.g Linum usitatissimum Lus10029719.g I 0.771
Lus10042749.g Linum usitatissimum Lus10042749.g I 0.771
AMTR_s00089p00081270 Amborella trichopoda AMTR_s00089p00081270 I 0.729
GLYMA01G37470 Glycine max GLYMA01G37470 I 0.729
GLYMA11G07820 Glycine max GLYMA11G07820 I 0.729
GSMUA_Achr3G02280_001 Musa acuminata GSMUA_Achr3G02280_001 I 0.729
GSMUA_Achr5G01230_001 Musa acuminata GSMUA_Achr5G01230_001 I 0.729
MTR_5g021270 Medicago truncatula MTR_5g021270 I 0.729
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 0.729
Ca_01994 Cicer arietinum Ca_01994 I 0.729
cassava33649.m1 Manihot esculenta cassava33649.m1 I 0.729
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.729
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.729
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.729
orange1.1g027470m.g Citrus sinensis orange1.1g027470m.g I 0.729
chr2.CM0249.370.nd Lotus japonicus chr2.CM0249.370.nd I 0.729
OPUNC09G14150 Oryza punctata OPUNC09G14150 I 0.727
Traes_7BL_7F4124E70 Triticum aestivum Traes_7BL_7F4124E70 I 0.720
gene26118-v1.0-hybrid Fragaria vesca gene26118-v1.0-hybrid I 0.714
AMTR_s00001p00217560 Amborella trichopoda AMTR_s00001p00217560 I 0.708
AMTR_s00066p00109320 Amborella trichopoda AMTR_s00066p00109320 I 0.708
CAL Arabidopsis thaliana AT1G26310 I 0.708
BRADI1G21980 Brachypodium distachyon BRADI1G21980 I 0.708
GRMZM2G147716 Zea mays GRMZM2G147716 I 0.708
GSMUA_Achr10G18600_001 Musa acuminata GSMUA_Achr10G18600_001 I 0.708
GSMUA_Achr6G00050_001 Musa acuminata GSMUA_Achr6G00050_001 I 0.708
GSMUA_Achr6G18670_001 Musa acuminata GSMUA_Achr6G18670_001 I 0.708
MLOC_59262 Hordeum vulgare MLOC_59262 I 0.708
MTR_5g046790 Medicago truncatula MTR_5g046790 I 0.708
PRUPE_ppa010727mg Prunus persica PRUPE_ppa010727mg I 0.708
PRUPE_ppa026083mg Prunus persica PRUPE_ppa026083mg I 0.708
Sb02g038780 Sorghum bicolor Sb02g038780 I 0.708
CAL Arabidopsis lyrata scaffold_102909.1 I 0.708
Si030896m.g Setaria italica Si030896m.g I 0.708
TCM_000266 Theobroma cacao TCM_000266 I 0.708
TRAES3BF021600020CFD_g Triticum aestivum TRAES3BF021600020CFD_g I 0.708
TRIUR3_15782 Triticum urartu TRIUR3_15782 I 0.708
AP3 Vitis vinifera VIT_18s0001g13460 I 0.708
Cla022374 Citrullus lanatus Cla022374 I 0.708
Pm006266 Prunus mume Pm006266 I 0.708
cassava21176.m1 Manihot esculenta cassava21176.m1 I 0.708
Cucsa.327980 Cucumis sativus Cucsa.327980 I 0.708
Bostr.12659s0367 Boechera stricta Bostr.12659s0367 I 0.708
Cagra.6677s0007 Capsella grandiflora Cagra.6677s0007 I 0.708
Carubv10011954m.g Capsella rubella Carubv10011954m.g I 0.708
Ciclev10026433m.g Citrus clementina Ciclev10026433m.g I 0.708
Eucgr.B00634 Eucalyptus grandis Eucgr.B00634 I 0.708
Gorai.008G064900 Gossypium raimondii Gorai.008G064900 I 0.708
MDP0000013331 Malus domestica MDP0000013331 I 0.708
MDP0000269921 Malus domestica MDP0000269921 I 0.708
O82695_MALDO Malus domestica O82695_MALDO D 0.708
SapurV1A.0168s0400 Salix purpurea SapurV1A.0168s0400 I 0.708
Pm026712 Prunus mume Pm026712 I 0.702