Ca_13111 (Cicer arietinum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Ca_13111 T256911_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MADS2_PETHY
M10998_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_01 		0.896 0.896
FBP1_PETHY
M10996_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP1_01 		0.854 0.854
Q9AVU7_MALDO
M11027_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PI_01 		0.854 0.854
PI
M08148_2.00 		Arabidopsis thaliana
MCMAAARWRGAAAR
YTTTCYWYTTTKGK		 ChIP-seq
Mathelier et al.(2014)
MA0559.1 		0.771 0.771
Q8VWZ4_MALDO
M11026_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS13_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ca_13111 MADS box 10 57

Links

Other MADS box family TFs
Other Cicer arietinum TFs

102 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA13G09660 Glycine max GLYMA13G09660 I 0.979
GLYMA14G24590 Glycine max GLYMA14G24590 I 0.979
LjSGA_047687.2 Lotus japonicus LjSGA_047687.2 I 0.979
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 0.917
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.917
orange1.1g040096m.g Citrus sinensis orange1.1g040096m.g I 0.917
GLYMA04G42420 Glycine max GLYMA04G42420 I 0.896
GLYMA06G12380 Glycine max GLYMA06G12380 I 0.896
MTR_3g088615 Medicago truncatula MTR_3g088615 I 0.896
TCM_035212 Theobroma cacao TCM_035212 I 0.896
Ca_03887 Cicer arietinum Ca_03887 I 0.896
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.896
29648.m001978 Ricinus communis 29648.m001978 I 0.896
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.896
gene11268-v1.0-hybrid Fragaria vesca gene11268-v1.0-hybrid I 0.896
PRUPE_ppa012927mg Prunus persica PRUPE_ppa012927mg I 0.875
PI Vitis vinifera VIT_18s0001g01760 I 0.875
Cla023547 Citrullus lanatus Cla023547 I 0.875
Pm004718 Prunus mume Pm004718 I 0.875
cassava32003.m1 Manihot esculenta cassava32003.m1 I 0.875
Cucsa.018420 Cucumis sativus Cucsa.018420 I 0.875
Ciclev10002422m.g Citrus clementina Ciclev10002422m.g I 0.875
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.875
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.875
orange1.1g042044m.g Citrus sinensis orange1.1g042044m.g I 0.875
MTR_1g029670 Medicago truncatula MTR_1g029670 I 0.854
PGSC0003DMG401007392 Solanum tuberosum PGSC0003DMG401007392 I 0.854
POPTR_0005s20480 Populus trichocarpa POPTR_0005s20480 I 0.854
Solyc06g059970.2 Solanum lycopersicum Solyc06g059970.2 I 0.854
Solyc08g067230.2 Solanum lycopersicum Solyc08g067230.2 I 0.854
FBP1_PETHY Petunia x hybrida FBP1_PETHY D 0.854
gene11267-v1.0-hybrid Fragaria vesca gene11267-v1.0-hybrid I 0.854
Lus10029719.g Linum usitatissimum Lus10029719.g I 0.854
Lus10042749.g Linum usitatissimum Lus10042749.g I 0.854
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.854
POPTR_0002s07920 Populus trichocarpa POPTR_0002s07920 I 0.833
mgf003143m Mimulus guttatus mgf003143m I 0.833
mgf006158m Mimulus guttatus mgf006158m I 0.833
mgf008207m Mimulus guttatus mgf008207m I 0.833
SapurV1A.0829s0180 Salix purpurea SapurV1A.0829s0180 I 0.812
Eucgr.E01006 Eucalyptus grandis Eucgr.E01006 I 0.792
PI Arabidopsis thaliana AT5G20240 D 0.771
Bo3g010390 Brassica oleracea Bo3g010390 I 0.771
PI Arabidopsis lyrata fgenesh2_kg.6__2063__AT5G20240.1 I 0.771
Bostr.26527s0175 Boechera stricta Bostr.26527s0175 I 0.771
Cagra.0179s0008 Capsella grandiflora Cagra.0179s0008 I 0.771
Carubv10001962m.g Capsella rubella Carubv10001962m.g I 0.771
Eucgr.E01007 Eucalyptus grandis Eucgr.E01007 I 0.771
Thhalv10014683m.g Eutrema salsugineum Thhalv10014683m.g I 0.771
Bo2g020730 Brassica oleracea Bo2g020730 I 0.750
Bo3g014100 Brassica oleracea Bo3g014100 I 0.750
Bo9g152080 Brassica oleracea Bo9g152080 I 0.750
Bra002285 Brassica rapa Bra002285 I 0.750
Bra006549 Brassica rapa Bra006549 I 0.750
Bra020093 Brassica rapa Bra020093 I 0.750
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 0.750
cassava33649.m1 Manihot esculenta cassava33649.m1 I 0.750
orange1.1g027470m.g Citrus sinensis orange1.1g027470m.g I 0.750
GSMUA_Achr6G18670_001 Musa acuminata GSMUA_Achr6G18670_001 I 0.729
MTR_5g046790 Medicago truncatula MTR_5g046790 I 0.729
TCM_000266 Theobroma cacao TCM_000266 I 0.729
AP3 Vitis vinifera VIT_18s0001g13460 I 0.729
cassava21176.m1 Manihot esculenta cassava21176.m1 I 0.729
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.729
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.729
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.729
Ciclev10026433m.g Citrus clementina Ciclev10026433m.g I 0.729
Gorai.008G064900 Gossypium raimondii Gorai.008G064900 I 0.729
AMTR_s00001p00217560 Amborella trichopoda AMTR_s00001p00217560 I 0.708
GLYMA01G37470 Glycine max GLYMA01G37470 I 0.708
GLYMA04G02980 Glycine max GLYMA04G02980 I 0.708
GLYMA06G02990 Glycine max GLYMA06G02990 I 0.708
GLYMA11G07820 Glycine max GLYMA11G07820 I 0.708
GSMUA_Achr3G02280_001 Musa acuminata GSMUA_Achr3G02280_001 I 0.708
MLOC_59262 Hordeum vulgare MLOC_59262 I 0.708
MTR_3g113030 Medicago truncatula MTR_3g113030 I 0.708
MTR_5g021270 Medicago truncatula MTR_5g021270 I 0.708
PGSC0003DMG400003541 Solanum tuberosum PGSC0003DMG400003541 I 0.708
POPTR_0005s12000 Populus trichocarpa POPTR_0005s12000 I 0.708
PRUPE_ppa010727mg Prunus persica PRUPE_ppa010727mg I 0.708
PRUPE_ppa026083mg Prunus persica PRUPE_ppa026083mg I 0.708
Sb03g041860 Sorghum bicolor Sb03g041860 I 0.708
Solyc02g084630.2 Solanum lycopersicum Solyc02g084630.2 I 0.708
TRAES3BF021600020CFD_g Triticum aestivum TRAES3BF021600020CFD_g I 0.708
TRIUR3_15782 Triticum urartu TRIUR3_15782 I 0.708
Ca_01994 Cicer arietinum Ca_01994 I 0.708
Ca_04909 Cicer arietinum Ca_04909 I 0.708
Cla021117 Citrullus lanatus Cla021117 I 0.708
Pm006266 Prunus mume Pm006266 I 0.708
Pm026712 Prunus mume Pm026712 I 0.708
Cucsa.342790 Cucumis sativus Cucsa.342790 I 0.708
evm.TU.supercontig_6.199 Carica papaya evm.TU.supercontig_6.199 I 0.708
evm.TU.supercontig_6.202 Carica papaya evm.TU.supercontig_6.202 I 0.708
Lus10033187.g Linum usitatissimum Lus10033187.g I 0.708
MDP0000133037 Malus domestica MDP0000133037 I 0.708
MDP0000184294 Malus domestica MDP0000184294 I 0.708
MDP0000224779 Malus domestica MDP0000224779 I 0.708
MDP0000315938 Malus domestica MDP0000315938 I 0.708
Q8VWZ4_MALDO Malus domestica Q8VWZ4_MALDO D 0.708
SapurV1A.2002s0050 Salix purpurea SapurV1A.2002s0050 I 0.708
chr1.CM0195.210.nc Lotus japonicus chr1.CM0195.210.nc I 0.708
chr2.CM0249.370.nd Lotus japonicus chr2.CM0249.370.nd I 0.708