GLYMA04G42420 (Glycine max)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 GLYMA04G42420 T254108_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MADS2_PETHY
M10998_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_01 		0.896 0.896
FBP1_PETHY
M10996_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP1_01 		0.875 0.875
Q9AVU7_MALDO
M11027_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PI_01 		0.833 0.833
MAD14_ORYSJ
M10960_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS14_01 		0.708 0.708
O82695_MALDO
M11019_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS5_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA04G42420.1 MADS box 10 57

Links

Other MADS box family TFs
Other Glycine max TFs

123 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA06G12380 Glycine max GLYMA06G12380 I 1.000
MTR_3g088615 Medicago truncatula MTR_3g088615 I 0.958
Ca_03887 Cicer arietinum Ca_03887 I 0.958
GLYMA13G09660 Glycine max GLYMA13G09660 I 0.917
GLYMA14G24590 Glycine max GLYMA14G24590 I 0.917
LjSGA_047687.2 Lotus japonicus LjSGA_047687.2 I 0.917
Ca_13111 Cicer arietinum Ca_13111 I 0.896
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.896
MTR_1g029670 Medicago truncatula MTR_1g029670 I 0.875
PGSC0003DMG401007392 Solanum tuberosum PGSC0003DMG401007392 I 0.875
Solyc08g067230.2 Solanum lycopersicum Solyc08g067230.2 I 0.875
TCM_035212 Theobroma cacao TCM_035212 I 0.875
Cla023547 Citrullus lanatus Cla023547 I 0.875
FBP1_PETHY Petunia x hybrida FBP1_PETHY D 0.875
29648.m001978 Ricinus communis 29648.m001978 I 0.875
cassava32003.m1 Manihot esculenta cassava32003.m1 I 0.875
Cucsa.018420 Cucumis sativus Cucsa.018420 I 0.875
Eucgr.E01006 Eucalyptus grandis Eucgr.E01006 I 0.875
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.875
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.875
POPTR_0005s20480 Populus trichocarpa POPTR_0005s20480 I 0.854
PI Vitis vinifera VIT_18s0001g01760 I 0.854
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.854
mgf003143m Mimulus guttatus mgf003143m I 0.854
mgf006158m Mimulus guttatus mgf006158m I 0.854
mgf008207m Mimulus guttatus mgf008207m I 0.854
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.854
POPTR_0002s07920 Populus trichocarpa POPTR_0002s07920 I 0.833
PRUPE_ppa012927mg Prunus persica PRUPE_ppa012927mg I 0.833
Pm004718 Prunus mume Pm004718 I 0.833
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 0.833
gene11267-v1.0-hybrid Fragaria vesca gene11267-v1.0-hybrid I 0.833
orange1.1g040096m.g Citrus sinensis orange1.1g040096m.g I 0.833
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.833
Solyc06g059970.2 Solanum lycopersicum Solyc06g059970.2 I 0.812
Ciclev10002422m.g Citrus clementina Ciclev10002422m.g I 0.812
Eucgr.E01007 Eucalyptus grandis Eucgr.E01007 I 0.812
gene11268-v1.0-hybrid Fragaria vesca gene11268-v1.0-hybrid I 0.812
orange1.1g042044m.g Citrus sinensis orange1.1g042044m.g I 0.812
SapurV1A.0829s0180 Salix purpurea SapurV1A.0829s0180 I 0.812
Lus10029719.g Linum usitatissimum Lus10029719.g I 0.792
Lus10042749.g Linum usitatissimum Lus10042749.g I 0.792
GSMUA_Achr5G01230_001 Musa acuminata GSMUA_Achr5G01230_001 I 0.750
GLYMA01G37470 Glycine max GLYMA01G37470 I 0.729
GLYMA11G07820 Glycine max GLYMA11G07820 I 0.729
GSMUA_Achr3G02280_001 Musa acuminata GSMUA_Achr3G02280_001 I 0.729
GSMUA_Achr6G18670_001 Musa acuminata GSMUA_Achr6G18670_001 I 0.729
MTR_5g021270 Medicago truncatula MTR_5g021270 I 0.729
MTR_5g046790 Medicago truncatula MTR_5g046790 I 0.729
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 0.729
Ca_01994 Cicer arietinum Ca_01994 I 0.729
cassava33649.m1 Manihot esculenta cassava33649.m1 I 0.729
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.729
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.729
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.729
orange1.1g027470m.g Citrus sinensis orange1.1g027470m.g I 0.729
chr2.CM0249.370.nd Lotus japonicus chr2.CM0249.370.nd I 0.729
Traes_7BL_7F4124E70 Triticum aestivum Traes_7BL_7F4124E70 I 0.720
gene26118-v1.0-hybrid Fragaria vesca gene26118-v1.0-hybrid I 0.714
AMTR_s00001p00217560 Amborella trichopoda AMTR_s00001p00217560 I 0.708
AMTR_s00066p00109320 Amborella trichopoda AMTR_s00066p00109320 I 0.708
AMTR_s00089p00081270 Amborella trichopoda AMTR_s00089p00081270 I 0.708
CAL Arabidopsis thaliana AT1G26310 I 0.708
BGIOSGA009798 Oryza indica BGIOSGA009798 I 0.708
BRADI1G21980 Brachypodium distachyon BRADI1G21980 I 0.708
GLYMA02G13420 Glycine max GLYMA02G13420 I 0.708
GRMZM2G032339 Zea mays GRMZM2G032339 I 0.708
GRMZM2G147716 Zea mays GRMZM2G147716 I 0.708
GRMZM2G553379 Zea mays GRMZM2G553379 I 0.708
GSMUA_Achr10G18600_001 Musa acuminata GSMUA_Achr10G18600_001 I 0.708
GSMUA_Achr4G23540_001 Musa acuminata GSMUA_Achr4G23540_001 I 0.708
GSMUA_Achr6G00050_001 Musa acuminata GSMUA_Achr6G00050_001 I 0.708
GSMUA_Achr7G00460_001 Musa acuminata GSMUA_Achr7G00460_001 I 0.708
MAD14_ORYSJ Oryza sativa MAD14_ORYSJ D 0.708
MLOC_59262 Hordeum vulgare MLOC_59262 I 0.708
MTR_4g109830 Medicago truncatula MTR_4g109830 I 0.708
OB03G41490 Oryza brachyantha OB03G41490 I 0.708
OBART03G34520 Oryza barthii OBART03G34520 I 0.708
OLONG_010503 Oryza longistaminata OLONG_010503 I 0.708
OMERI03G31620 Oryza meridionalis OMERI03G31620 I 0.708
ONIVA03G35980 Oryza nivara ONIVA03G35980 I 0.708
OPUNC03G31590 Oryza punctata OPUNC03G31590 I 0.708
ORGLA03G0314900 Oryza glaberrima ORGLA03G0314900 I 0.708
ORUFI03G35930 Oryza rufipogon ORUFI03G35930 I 0.708
OS03G0752800 Oryza sativa OS03G0752800 I 0.708
PRUPE_ppa010727mg Prunus persica PRUPE_ppa010727mg I 0.708
PRUPE_ppa019932mg Prunus persica PRUPE_ppa019932mg I 0.708
PRUPE_ppa022942mg Prunus persica PRUPE_ppa022942mg I 0.708
PRUPE_ppa026083mg Prunus persica PRUPE_ppa026083mg I 0.708
Sb01g007790 Sorghum bicolor Sb01g007790 I 0.708
Sb02g038780 Sorghum bicolor Sb02g038780 I 0.708
Sb03g041860 Sorghum bicolor Sb03g041860 I 0.708
CAL Arabidopsis lyrata scaffold_102909.1 I 0.708
Si030896m.g Setaria italica Si030896m.g I 0.708
TCM_000266 Theobroma cacao TCM_000266 I 0.708
TRAES3BF021600020CFD_g Triticum aestivum TRAES3BF021600020CFD_g I 0.708
TRIUR3_15782 Triticum urartu TRIUR3_15782 I 0.708
AP3 Vitis vinifera VIT_18s0001g13460 I 0.708
Cla022374 Citrullus lanatus Cla022374 I 0.708
Pm006266 Prunus mume Pm006266 I 0.708
Pm018087 Prunus mume Pm018087 I 0.708
cassava21176.m1 Manihot esculenta cassava21176.m1 I 0.708
cassava46263.m1 Manihot esculenta cassava46263.m1 I 0.708
Cucsa.327980 Cucumis sativus Cucsa.327980 I 0.708
Aquca_002_00911 Aquilegia coerulea Aquca_002_00911 I 0.708
Aquca_014_00308 Aquilegia coerulea Aquca_014_00308 I 0.708
Bostr.12659s0367 Boechera stricta Bostr.12659s0367 I 0.708
Cagra.6677s0007 Capsella grandiflora Cagra.6677s0007 I 0.708
Carubv10011954m.g Capsella rubella Carubv10011954m.g I 0.708
Ciclev10026433m.g Citrus clementina Ciclev10026433m.g I 0.708
Ciclev10032927m.g Citrus clementina Ciclev10032927m.g I 0.708
Eucgr.B00634 Eucalyptus grandis Eucgr.B00634 I 0.708
Eucgr.G02427 Eucalyptus grandis Eucgr.G02427 I 0.708
Gorai.008G064900 Gossypium raimondii Gorai.008G064900 I 0.708
MDP0000013331 Malus domestica MDP0000013331 I 0.708
MDP0000269921 Malus domestica MDP0000269921 I 0.708
MDP0000574222 Malus domestica MDP0000574222 I 0.708
O82695_MALDO Malus domestica O82695_MALDO D 0.708
orange1.1g042438m.g Citrus sinensis orange1.1g042438m.g I 0.708
Pavir.Ia00530 Panicum virgatum Pavir.Ia00530 I 0.708
Pavir.J03093 Panicum virgatum Pavir.J03093 I 0.708
SapurV1A.0168s0400 Salix purpurea SapurV1A.0168s0400 I 0.708
Pm026712 Prunus mume Pm026712 I 0.702