Lus10042749.g (Linum usitatissimum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Lus10042749.g T258635_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FBP1_PETHY
M10996_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP1_01 		0.854 0.854
MADS2_PETHY
M10998_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_01 		0.854 0.854
Q9AVU7_MALDO
M11027_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PI_01 		0.833 0.833
PI
M08148_2.00 		Arabidopsis thaliana
MCMAAARWRGAAAR
YTTTCYWYTTTKGK		 ChIP-seq
Mathelier et al.(2014)
MA0559.1 		0.792 0.792
AP3
M08146_2.00 		Arabidopsis thaliana
WDCCMAAARWRGHAA
TTDCYWYTTTKGGHW		 ChIP-seq
Mathelier et al.(2014)
MA0556.1 		0.729 0.729
Q40513_TOBAC
M11001_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DEF_01 		0.729 0.729
AP3
M10919_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSB_Q2 		0.729 0.729
AGL6
M06986_2.00 		Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA		 Dap-seq
OMalley et al.(2016)
AGL6_col_a 		0.708 0.708
O82699_MALDO
M11022_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_01 		0.708 0.708
MAD17_ORYSJ
M10961_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS17_01 		0.708 0.708
MADS6
M10967_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS6_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10042749 MADS box 10 57

Links

Other MADS box family TFs
Other Linum usitatissimum TFs

179 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10029719.g Linum usitatissimum Lus10029719.g I 1.000
29648.m001978 Ricinus communis 29648.m001978 I 0.896
Ciclev10002422m.g Citrus clementina Ciclev10002422m.g I 0.896
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.896
orange1.1g042044m.g Citrus sinensis orange1.1g042044m.g I 0.896
TCM_035212 Theobroma cacao TCM_035212 I 0.875
PI Vitis vinifera VIT_18s0001g01760 I 0.875
Cla023547 Citrullus lanatus Cla023547 I 0.875
cassava32003.m1 Manihot esculenta cassava32003.m1 I 0.875
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.875
Cucsa.018420 Cucumis sativus Cucsa.018420 I 0.875
mgf003143m Mimulus guttatus mgf003143m I 0.875
mgf006158m Mimulus guttatus mgf006158m I 0.875
mgf008207m Mimulus guttatus mgf008207m I 0.875
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 0.875
gene11268-v1.0-hybrid Fragaria vesca gene11268-v1.0-hybrid I 0.875
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.875
orange1.1g040096m.g Citrus sinensis orange1.1g040096m.g I 0.875
GLYMA13G09660 Glycine max GLYMA13G09660 I 0.854
GLYMA14G24590 Glycine max GLYMA14G24590 I 0.854
PGSC0003DMG401007392 Solanum tuberosum PGSC0003DMG401007392 I 0.854
PRUPE_ppa012927mg Prunus persica PRUPE_ppa012927mg I 0.854
Solyc06g059970.2 Solanum lycopersicum Solyc06g059970.2 I 0.854
Solyc08g067230.2 Solanum lycopersicum Solyc08g067230.2 I 0.854
Ca_13111 Cicer arietinum Ca_13111 I 0.854
Pm004718 Prunus mume Pm004718 I 0.854
FBP1_PETHY Petunia x hybrida FBP1_PETHY D 0.854
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.854
SapurV1A.0829s0180 Salix purpurea SapurV1A.0829s0180 I 0.854
LjSGA_047687.2 Lotus japonicus LjSGA_047687.2 I 0.854
POPTR_0002s07920 Populus trichocarpa POPTR_0002s07920 I 0.833
POPTR_0005s20480 Populus trichocarpa POPTR_0005s20480 I 0.833
Eucgr.E01006 Eucalyptus grandis Eucgr.E01006 I 0.833
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.833
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.833
gene11267-v1.0-hybrid Fragaria vesca gene11267-v1.0-hybrid I 0.812
PI Arabidopsis thaliana AT5G20240 D 0.792
Bo3g010390 Brassica oleracea Bo3g010390 I 0.792
Bo9g152080 Brassica oleracea Bo9g152080 I 0.792
Bra002285 Brassica rapa Bra002285 I 0.792
PI Arabidopsis lyrata fgenesh2_kg.6__2063__AT5G20240.1 I 0.792
GLYMA04G42420 Glycine max GLYMA04G42420 I 0.792
GLYMA06G12380 Glycine max GLYMA06G12380 I 0.792
Aquca_032_00047 Aquilegia coerulea Aquca_032_00047 I 0.792
Bostr.26527s0175 Boechera stricta Bostr.26527s0175 I 0.792
Cagra.0179s0008 Capsella grandiflora Cagra.0179s0008 I 0.792
Carubv10001962m.g Capsella rubella Carubv10001962m.g I 0.792
Eucgr.E01007 Eucalyptus grandis Eucgr.E01007 I 0.792
Thhalv10014683m.g Eutrema salsugineum Thhalv10014683m.g I 0.792
Bo2g020730 Brassica oleracea Bo2g020730 I 0.771
Bo3g014100 Brassica oleracea Bo3g014100 I 0.771
Bra006549 Brassica rapa Bra006549 I 0.771
Bra020093 Brassica rapa Bra020093 I 0.771
MTR_3g088615 Medicago truncatula MTR_3g088615 I 0.771
Ca_03887 Cicer arietinum Ca_03887 I 0.771
Bo4g120010 Brassica oleracea Bo4g120010 I 0.750
Bo8g083600 Brassica oleracea Bo8g083600 I 0.750
Bra007067 Brassica rapa Bra007067 I 0.750
Bra014822 Brassica rapa Bra014822 I 0.750
MTR_1g029670 Medicago truncatula MTR_1g029670 I 0.750
TCM_000266 Theobroma cacao TCM_000266 I 0.750
Pm006266 Prunus mume Pm006266 I 0.750
Gorai.003G011500 Gossypium raimondii Gorai.003G011500 I 0.750
Gorai.008G064900 Gossypium raimondii Gorai.008G064900 I 0.750
Lus10033187.g Linum usitatissimum Lus10033187.g I 0.750
Thhalv10010683m.g Eutrema salsugineum Thhalv10010683m.g I 0.750
AMTR_s00001p00217560 Amborella trichopoda AMTR_s00001p00217560 I 0.729
AP3 Arabidopsis thaliana AT3G54340 D 0.729
AP3 Arabidopsis lyrata fgenesh2_kg.5__1825__AT3G54340.1 I 0.729
GLYMA04G02980 Glycine max GLYMA04G02980 I 0.729
GLYMA06G02990 Glycine max GLYMA06G02990 I 0.729
GSMUA_Achr6G18670_001 Musa acuminata GSMUA_Achr6G18670_001 I 0.729
MTR_3g113030 Medicago truncatula MTR_3g113030 I 0.729
PRUPE_ppa019932mg Prunus persica PRUPE_ppa019932mg I 0.729
PRUPE_ppa026083mg Prunus persica PRUPE_ppa026083mg I 0.729
Ca_04909 Cicer arietinum Ca_04909 I 0.729
Cla021117 Citrullus lanatus Cla021117 I 0.729
Pm018087 Prunus mume Pm018087 I 0.729
Q40513_TOBAC Nicotiana tabacum Q40513_TOBAC D 0.729
cassava21176.m1 Manihot esculenta cassava21176.m1 I 0.729
cassava33649.m1 Manihot esculenta cassava33649.m1 I 0.729
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.729
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.729
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.729
Cucsa.342790 Cucumis sativus Cucsa.342790 I 0.729
Bostr.0697s0046 Boechera stricta Bostr.0697s0046 I 0.729
Cagra.0562s0025 Capsella grandiflora Cagra.0562s0025 I 0.729
Cagra.0578s0070 Capsella grandiflora Cagra.0578s0070 I 0.729
Carubv10017886m.g Capsella rubella Carubv10017886m.g I 0.729
Carubv10018833m.g Capsella rubella Carubv10018833m.g I 0.729
Lus10010630.g Linum usitatissimum Lus10010630.g I 0.729
Lus10031960.g Linum usitatissimum Lus10031960.g I 0.729
chr1.CM0195.210.nc Lotus japonicus chr1.CM0195.210.nc I 0.729
OPUNC09G14150 Oryza punctata OPUNC09G14150 I 0.727
Traes_7BL_7F4124E70 Triticum aestivum Traes_7BL_7F4124E70 I 0.720
gene26118-v1.0-hybrid Fragaria vesca gene26118-v1.0-hybrid I 0.714
AMTR_s00001p00267050 Amborella trichopoda AMTR_s00001p00267050 I 0.708
AGL6 Arabidopsis thaliana AT2G45650 D 0.708
AGL18 Arabidopsis thaliana AT3G57390 I 0.708
BGIOSGA008820 Oryza indica BGIOSGA008820 I 0.708
BGIOSGA016980 Oryza indica BGIOSGA016980 I 0.708
Bo6g072840 Brassica oleracea Bo6g072840 I 0.708
Bra003278 Brassica rapa Bra003278 I 0.708
BRADI1G35000 Brachypodium distachyon BRADI1G35000 I 0.708
BRADI3G51800 Brachypodium distachyon BRADI3G51800 I 0.708
F775_31247 Aegilops tauschii F775_31247 I 0.708
AGL6 Arabidopsis lyrata fgenesh2_kg.4__2761__AT2G45650.1 I 0.708
GLYMA03G02191 Glycine max GLYMA03G02191 I 0.708
GLYMA03G02210 Glycine max GLYMA03G02210 I 0.708
GLYMA07G08890 Glycine max GLYMA07G08890 I 0.708
GRMZM2G160565 Zea mays GRMZM2G160565 I 0.708
GSMUA_Achr11G21480_001 Musa acuminata GSMUA_Achr11G21480_001 I 0.708
GSMUA_Achr1G00750_001 Musa acuminata GSMUA_Achr1G00750_001 I 0.708
GSMUA_Achr2G10250_001 Musa acuminata GSMUA_Achr2G10250_001 I 0.708
GSMUA_Achr4G30120_001 Musa acuminata GSMUA_Achr4G30120_001 I 0.708
LPERR02G22830 Leersia perrieri LPERR02G22830 I 0.708
LPERR04G18560 Leersia perrieri LPERR04G18560 I 0.708
MAD17_ORYSJ Oryza sativa MAD17_ORYSJ D 0.708
MLOC_52944 Hordeum vulgare MLOC_52944 I 0.708
MTR_8g033270 Medicago truncatula MTR_8g033270 I 0.708
OB02G35340 Oryza brachyantha OB02G35340 I 0.708
OB04G29660 Oryza brachyantha OB04G29660 I 0.708
OBART02G28030 Oryza barthii OBART02G28030 I 0.708
OBART04G22790 Oryza barthii OBART04G22790 I 0.708
OGLUM02G28590 Oryza glumaepatula OGLUM02G28590 I 0.708
OGLUM04G22680 Oryza glumaepatula OGLUM04G22680 I 0.708
OLONG_003266 Oryza longistaminata OLONG_003266 I 0.708
OMERI02G27210 Oryza meridionalis OMERI02G27210 I 0.708
OMERI04G19060 Oryza meridionalis OMERI04G19060 I 0.708
ONIVA02G31130 Oryza nivara ONIVA02G31130 I 0.708
ONIVA04G21940 Oryza nivara ONIVA04G21940 I 0.708
OPUNC02G25740 Oryza punctata OPUNC02G25740 I 0.708
OPUNC04G20380 Oryza punctata OPUNC04G20380 I 0.708
ORGLA02G0240800 Oryza glaberrima ORGLA02G0240800 I 0.708
ORGLA04G0197900 Oryza glaberrima ORGLA04G0197900 I 0.708
ORUFI02G29550 Oryza rufipogon ORUFI02G29550 I 0.708
ORUFI04G24470 Oryza rufipogon ORUFI04G24470 I 0.708
MADS6 Oryza sativa OS02G0682200 D 0.708
OS04G0580700 Oryza sativa OS04G0580700 I 0.708
PRUPE_ppa022942mg Prunus persica PRUPE_ppa022942mg I 0.708
Sb04g031750 Sorghum bicolor Sb04g031750 I 0.708
Si018160m.g Setaria italica Si018160m.g I 0.708
TCM_005458 Theobroma cacao TCM_005458 I 0.708
TCM_034148 Theobroma cacao TCM_034148 I 0.708
Traes_6AL_1F7DAC5FA Triticum aestivum Traes_6AL_1F7DAC5FA I 0.708
Traes_6BL_7C6B17284 Triticum aestivum Traes_6BL_7C6B17284 I 0.708
Traes_6DL_5B1D4DBF5 Triticum aestivum Traes_6DL_5B1D4DBF5 I 0.708
TRIUR3_22246 Triticum urartu TRIUR3_22246 I 0.708
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 0.708
VIT_15s0048g01270 Vitis vinifera VIT_15s0048g01270 I 0.708
VIT_16s0022g02330 Vitis vinifera VIT_16s0022g02330 I 0.708
29782.m000119 Ricinus communis 29782.m000119 I 0.708
30174.m008934 Ricinus communis 30174.m008934 I 0.708
cassava28636.m1 Manihot esculenta cassava28636.m1 I 0.708
mgf001713m Mimulus guttatus mgf001713m I 0.708
mgf007278m Mimulus guttatus mgf007278m I 0.708
Aquca_013_00477 Aquilegia coerulea Aquca_013_00477 I 0.708
Bostr.25993s0209 Boechera stricta Bostr.25993s0209 I 0.708
Cagra.0050s0135 Capsella grandiflora Cagra.0050s0135 I 0.708
Carubv10023910m.g Capsella rubella Carubv10023910m.g I 0.708
Ciclev10021911m.g Citrus clementina Ciclev10021911m.g I 0.708
evm.TU.supercontig_414.3 Carica papaya evm.TU.supercontig_414.3 I 0.708
evm.TU.supercontig_6.199 Carica papaya evm.TU.supercontig_6.199 I 0.708
evm.TU.supercontig_6.202 Carica papaya evm.TU.supercontig_6.202 I 0.708
gene19428-v1.0-hybrid Fragaria vesca gene19428-v1.0-hybrid I 0.708
Gorai.007G093700 Gossypium raimondii Gorai.007G093700 I 0.708
Gorai.009G271100 Gossypium raimondii Gorai.009G271100 I 0.708
MDP0000149676 Malus domestica MDP0000149676 I 0.708
MDP0000152821 Malus domestica MDP0000152821 I 0.708
MDP0000574222 Malus domestica MDP0000574222 I 0.708
O82699_MALDO Malus domestica O82699_MALDO D 0.708
orange1.1g027470m.g Citrus sinensis orange1.1g027470m.g I 0.708
orange1.1g037149m.g Citrus sinensis orange1.1g037149m.g I 0.708
Pavir.Aa00924 Panicum virgatum Pavir.Aa00924 I 0.708
Pavir.Ab02707 Panicum virgatum Pavir.Ab02707 I 0.708
SapurV1A.0168s0400 Salix purpurea SapurV1A.0168s0400 I 0.708
SapurV1A.0578s0120 Salix purpurea SapurV1A.0578s0120 I 0.708
PDK_20s1538871g001 Phoenix dactylifera PDK_20s1538871g001 I 0.708
Pm026712 Prunus mume Pm026712 I 0.702