CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Cagra.0157s0011
(
Capsella grandiflora
)
mTERF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02536 (mTERF)
IPR003690
Cagra.0157s0011
T264611_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.0157s0011.1.p
mTERF
78
333
QSASDADVASSLPSLRKFLGSDGDEDGESEREMIVKALEIRRKVTKEIIKESLVRKGRFGITYATNVTDRLGNFVDHVMIEAAAMKRLPEFSESRFNLRARTVIEDSNFVPLVRWLKHNEFSYNRIAKIICMSKGNLDSIRTMIEWLKTIHVKSEFIGVAFLRSGGNILQRSREELDDIVEYLESNGLRRDWMGFVVGRCPELLSFSMEEVKRRVNFFLQMGMNQNDFGTMVFDYPKIIGYFSFEEMEKKINYLKE
Cagra.0157s0011.1.p
mTERF
288
565
VKRRVNFFLQMGMNQNDFGTMVFDYPKIIGYFSFEEMEKKINYLKEFGLSTEEVGRLLAFKPHIMGCSIEERWKPLVKYFYYLGISKEGMRRILVVKPILYCTDLEKTIAPKVRFLQEMGIPNEAIGNMLVKFPSLLTNSLYKKIRPVVIFLLTRAGVTQENIGKVIAMDPALLGCSIGTKLEPNMKYYISLGIRFHQLGEMIADFPMLLRYNVDNLRPKYRYLRRTMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVQNRVNFKLRYMLACTDEEFE
Links
Other
mTERF
family TFs
Other
Capsella grandiflora
TFs
3 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bostr.5109s0001
Boechera stricta
Bostr.5109s0001
N
0.918
EMB2219
Arabidopsis lyrata
fgenesh2_kg.4__96__AT2G21710.1
N
0.858
MTERF2
Arabidopsis thaliana
AT2G21710
N
0.717